ViewGene
Locus Name:
GeneID:
Location:

GeneID:5141
TrivialName: PA14_57950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57950
PAO1 Ortholog Locus:PA4463
Sequence Length:309
Protein Length:102
Start: 5158032
Stop: 5158340
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07851.1|AE004860_7 (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 102/102 (100%), Positives = 102/102 (100%)
Sequence:
ATGCAAGTCAACATCAGTGGCCATCAACTGGATGTGACCGACGCCCTGCGCGACTATGTCGGCGAGAAACTG
AGCCGTCTGGAGCGCCATTTCGACAAGATCACCAATGTTCAGGTGATCATGGAGGTCGAGAAACTGAAGCAG
AAGATCGAAGCCACTCTGCGCATCGCCGGTGGCGAGATCGTAGCCAATGCGGAACATGAGGACATGTACGCG
GCCATCGACCTGCTGATCGACAAACTCGACCGTCAACTGATCAAACACAAAGAGAAGTATCTCGAACGGCAG
CAAGGCGTAGGCGCCCGCTGA
Translation:
MQVNISGHQLDVTDALRDYVGEKLSRLERHFDKITNVQVIMEVEKLKQKIEATLRIAGGEIVANAEHEDMYA
AIDLLIDKLDRQLIKHKEKYLERQQGVGAR*
AnnotationID:5146GeneID:5141
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 07:07:04
Gene Name:
Confidence Code:3
GeneProduct:putative ribosomal subunit interface protein
Cell Localization:()
Synonyms:PA4463
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02482,COG1544
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAQ17036.1| (AY341911) putative sigma-54 modulation protein [Pseudomonas
           fluorescens]
          Length = 110

 Score =  159 bits (403), Expect = 2e-39
 Identities = 81/100 (81%), Positives = 86/100 (86%)

>gb|AAO57903.1| (AE016872) ribosomal subunit interface protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 102

 Score =  149 bits (377), Expect = 2e-36
 Identities = 77/102 (75%), Positives = 84/102 (82%)


>gb|AAN56936.1|AE015827_8 (AE015827) ribosomal subunit interface protein [Shewanella
          oneidensis MR-1]
          Length = 95

 Score =  124 bits (310), Expect = 1e-28
 Identities = 55/91 (60%), Positives = 76/91 (83%)








 
Structural Features:
pfam02482, Ribosomal_S30AE, Sigma 54 modulation protein / S30EA ribosomal protein. 
CD-Length = 94 residues, 100.0% aligned
Score =  116 bits (291), Expect = 1e-27
Identities = 50/94 (53%), Positives = 71/94 (75%)

COG1544, Ribosome-associated protein Y (PSrp-1) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 110 residues,  94.5% aligned
Score =  108 bits (270), Expect = 3e-25
Identities = 55/104 (52%), Positives = 78/104 (75%), Gaps = 2/104 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10282




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27426




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31502




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5141_cdd.html


    		




 
URL:

















    ReferenceID:31503




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5141_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5141
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7549
                           PA4463_tr
                           translation of PA4463
                           102
                           99.99
                           99.99
                           0
                           508.0
     

     
     
193944
                           gb|AAG07851.1|AE004860_7
                           (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           102
                           99.99
                           99.99
                           0
                           508.0
     

     
     
193945
                           gb|AAA19794.1|
                           (L26916) ORF1 [Pseudomonas aeruginosa]
                           103
                           99.02
                           99.02
                           1
                           498.0
     

     
     
193946
                           emb|CAA34389.1|
                           (X16334) unnamed protein product [Azotobacter vinelandii]
                           107
                           79.43
                           85.98
                           5
                           428.0
     

     
     
193949
                           gb|AAO57903.1|
                           (AE016872) ribosomal subunit interface protein [Pseudomonas syringae pv. tomato str. DC3000]
                           102
                           75.49
                           82.35
                           0
                           377.0
     

     






      

          
GC ORFID: 48143How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4463Glimmer Score: 

          
Start: 4421711Stop: 4422019

          
Length: 309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4463 translation of PA4463Homolog Bit Score 200.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5548 (ORF: BLASTX 152.0), t_PA4463 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGTCAACATCAGTGGCCATCAACTGGATGTGACCGACGCCCTGCGCGACTATGTCGGCGAGAAACTG 
AGCCGTCTGGAGCGCCATTTCGACAAGATCACCAATGTTCAGGTGATCATGGAGGTCGAGAAACTGAAGCAG 
AAGATCGAAGCCACTCTGCGCATCGCCGGTGGCGAGATCGTAGCCAATGCGGAACATGAGGACATGTACGCG 
GCCATCGACCTGCTGATCGACAAACTCGACCGTCAACTGATCAAACACAAAGAGAAGTATCTCGAACGGCAG 
CAAGGCGTAGGCGCCCGCTGA