ViewGene
Locus Name:
GeneID:
Location:

GeneID:5140
TrivialName: PA14_08320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08320
PAO1 Ortholog Locus:PA0647
Sequence Length:303
Protein Length:100
Start: 713513
Stop: 713815
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04036.1|AE004500_2 (AE004500) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 100/100 (100%), Positives = 100/100 (100%)
Sequence:
ATGCGTATCGAACTCAGTCCGGTTGTAGTCCTGCCCGAGGACTCGACTGATATGGATGTCATGGTTTCCGGA
GATTCGATAGCCGTCTCGGGTGTCATGTACGACTTCTCGCAGTTACCGGAGGGGGGATATCTGCCAGCCTCT
GCCATCCATGAGGGGCCTTTTTCCGGGAGGGTTACCAGGGCAGGCGGAGAGATATGCCTGACATTGGTGTTT
CCCATCCGGGGGAGCTACAGCGAAGCTGCCAAATTCCCTGTCCCCATCCATATCGTTGAAGACGGAACCGTG
GAGTTGCCCAAGTGA
Translation:
MRIELSPVVVLPEDSTDMDVMVSGDSIAVSGVMYDFSQLPEGGYLPASAIHEGPFSGRVTRAGGEICLTLVF
PIRGSYSEAAKFPVPIHIVEDGTVELPK*
AnnotationID:5145GeneID:5140
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 14:02:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0647
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10280




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27424




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5140
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7548
                           PA0647_tr
                           translation of PA0647
                           100
                           99.99
                           99.99
                           0
                           512.0
     

     
     
193943
                           gb|AAG04036.1|AE004500_2
                           (AE004500) hypothetical protein PA0647 [Pseudomonas aeruginosa PAO1]
                           100
                           99.99
                           99.99
                           0
                           512.0
     

     






      

          
GC ORFID: 48142How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0647Glimmer Score: 

          
Start: 6514856Stop: 6515158

          
Length: 303


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0647 translation of PA0647Homolog Bit Score 201.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCGTATCGAACTCAGTCCGGTTGTAGTCCTGCCCGAGGACTCGACTGATATGGATGTCATGGTTTCCGGA 
GATTCGATAGCCGTCTCGGGTGTCATGTACGACTTCTCGCAGTTACCGGAGGGGGGATATCTGCCAGCCTCT 
GCCATCCATGAGGGGCCTTTTTCCGGGAGGGTTACCAGGGCAGGCGGAGAGATATGCCTGACATTGGTGTTT 
CCCATCCGGGGGAGCTACAGCGAAGCTGCCAAATTCCCTGTCCCCATCCATATCGTTGAAGACGGAACCGTG 
GAGTTGCCCAAGTGA