ViewGene
Locus Name:
GeneID:
Location:

GeneID:514
TrivialName: PA14_57480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57480
PAO1 Ortholog Locus:PA4423
Sequence Length:1815
Protein Length:604
Start: 5121267
Stop: 5123081
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07811.1|AE004857_2 (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 602/604 (99%), Positives = 602/604 (99%)
Sequence:
ATGATCGCTCGCCTGCGTCCGCTTTCTGCTCTGATCCTGGCCGGTCTGCTGACCGCCTGCGCGACCTCGTCC
AATTCCGGACTGGGCGAACTTCCCCGTACGCCGAATGCCAGCATCGAGCAGTTGTTGCAACAGGCCAGCCAG
AGCAAGCCCGAGGAAGCGGCGCTGCTGCGCCTCTCGGCAGCGGACCTTGCCTACCAGCAGAAGGACCTCGCC
AGGTCCACCGCCATCCTGGGACAGATCCCGCTGGAAAGCCTGAAGCCGGCCCAGCAGGTCTTCGCCAGCACC
CTGAACGCCGAACTGGCCCTCGCCCGCAGCAAGCCCAAGGCCGCCCTGCAGGCATTGCAGCATCCGAGCATG
CAGCATCTCAGCGAGCTGCCGGTGACCCAGCAGGTTCGTACCCAGCGCGCCAAGGCCCAGGCCCTCGCCGCC
GACGGCCAGGTCCTTGCCGCAGCCAAGGAGCGCATCTACTTCGCCCCGCTGCTCGAGGGCCCGGCGGTGATC
GAGAACCAGGAAAAGATCTGGACCCTGGTCAGCAGCCTGCCGGTCGACCAGTTGCAACCGAGCGCCAACGAA
GGCGACCTCAGTGGCTGGCTGGCTCTGGCCCGCATCACCAAGACCTCGCCGACCCTGCAACAACAGCAGGCC
AGCATCGAGAGCTGGCAACAGCAGAACCCCGAGCACCCGGCGGCCAAGCACTTGCCGGCGGCGCTGGAGAAA
CTCAAGACGCTGTCCCAGCAGCCGCTGACCCGCATCGCCCTCCTGCTACCCCAGCAGGGGCAGTTGGCCAAC
GTCGCCCGGGCCCTGCAGGACGGCTTCCTCGCCGCCCACTTCCAGGCCCAGCAGGCCGGCCAGAACCCTCCT
TCGATCAAACTCTACGACAGTACCCAGGTGCGCTCGCTAGATGACTTCTACCGCCAGGCCCAGGCCGATGGC
GTCGAACTGGTCGTCGGTCCACTGGAGAAGCCGCTGGTCAAGCAACTCGCCAGCCGCGAGCAACTGCCGATC
ACCACCCTCGCACTCAACTACAGCGACAACAGCCAGGAAGGCCCGGCGCAGCTGTTCCAGTTCGGCCTCGCC
GCCGAGGACGAAGCGCGCGCGGTGGCCAGCCGGGCCTGGGGCGACGGCATGCGCCGGGCCGTGGCGCTGGTG
CCGCGCGGCGAATGGGGCGACCGCGTGCTGGCCGCCTTCAGCCAGAGCTGGCAGTCCGCGGGCGGCAGCCTG
ATCGCCGCCGAGCATGTCGACCAGCCGGTACAACTGGCGCAACAGATCGCCGACCTGCTGCAACTGCGCCAG
AGCGAAGGCCGCGCCCAGCGCCTGCAGGGCGCCCTCGGCAGCCAGATCGCCACCCAGCCGTCGCGCCGCCAG
GACATCGACTTCGTGTTCCTCGCCGCTACCCCGCAGCAGGCCCGCCAGATCAAGCCGACCCTGGCCTTCCAA
TACGCCGGCGACCTTCCGGTCTACGCCACTTCGCACCTCTACACCGGGACCAACAACCCGACCCAGGACCAG
GACCTCAACGGCATCCGCTTCTGCGAGACCCCGTGGCTGCTCAACCCCAGCGACCCGACCCGCCAGCAGGTC
GCCGCCCAATGGCCCCAGGCCAACGGCAGCATGGGCCGCCTCTACGCCATGGGCGTCGACGCCTACCGCCTC
GCTCCGCGACTGCCTGAACTGAAGGCCGTGCCGAGCCTGCAGATCGACGGCCTGACCGGTACCCTGAGCCTG
AATCCGACCCAACGTATCGAACGCCAGTTGCAATGGGCCGAGTTCCGCAATGGCCAGGTCCAGCCGCTGGGG
ACCAGCAGCTTTTGA
Translation:
MIARLRPLSALILAGLLTACATSSNSGLGELPRTPNASIEQLLQQASQSKPEEAALLRLSAADLAYQQKDLA
RSTAILGQIPLESLKPAQQVFASTLNAELALARSKPKAALQALQHPSMQHLSELPVTQQVRTQRAKAQALAA
DGQVLAAAKERIYFAPLLEGPAVIENQEKIWTLVSSLPVDQLQPSANEGDLSGWLALARITKTSPTLQQQQA
SIESWQQQNPEHPAAKHLPAALEKLKTLSQQPLTRIALLLPQQGQLANVARALQDGFLAAHFQAQQAGQNPP
SIKLYDSTQVRSLDDFYRQAQADGVELVVGPLEKPLVKQLASREQLPITTLALNYSDNSQEGPAQLFQFGLA
AEDEARAVASRAWGDGMRRAVALVPRGEWGDRVLAAFSQSWQSAGGSLIAAEHVDQPVQLAQQIADLLQLRQ
SEGRAQRLQGALGSQIATQPSRRQDIDFVFLAATPQQARQIKPTLAFQYAGDLPVYATSHLYTGTNNPTQDQ
DLNGIRFCETPWLLNPSDPTRQQVAAQWPQANGSMGRLYAMGVDAYRLAPRLPELKAVPSLQIDGLTGTLSL
NPTQRIERQLQWAEFRNGQVQPLGTSSF*
AnnotationID:523GeneID:514
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 18:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4423
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3107,pfam04348
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57868.1| (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 604

 Score =  833 bits (2151), Expect = 0.0
 Identities = 419/600 (69%), Positives = 499/600 (83%), Gaps = 2/600 (0%)

>gb|AAN66949.1|AE016323_2 (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 605

 Score =  791 bits (2042), Expect = 0.0
 Identities = 405/600 (67%), Positives = 488/600 (81%), Gaps = 1/600 (0%)






 
Structural Features:
COG3107, LppC, Putative lipoprotein
CD-Length = 604 residues,  98.8% aligned
Score =  575 bits (1482), Expect = 1e-164
Identities = 260/607 (42%), Positives = 335/607 (55%), Gaps = 17/607 (2%)

pfam04348, LppC, LppC putative lipoprotein.
CD-Length = 536 residues, 100.0% aligned
Score =  572 bits (1476), Expect = 8e-164
Identities = 232/570 (40%), Positives = 319/570 (55%), Gaps = 41/570 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1031




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18173




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31464




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:514_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:514
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
905
                           PA4423_tr
                           translation of PA4423
                           604
                           99.66
                           99.66
                           0
                           3024.0
     

     
     
36746
                           gb|AAG07811.1|AE004857_2
                           (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           604
                           99.66
                           99.66
                           0
                           3024.0
     

     
     
36747
                           gb|AAO57868.1|
                           (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           605
                           69.25
                           82.80
                           2
                           2150.0
     

     
     
36748
                           gb|AAN66949.1|AE016323_2
                           (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
                           605
                           66.94
                           80.82
                           1
                           2037.0
     

     






      

          
GC ORFID: 43516How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4423Glimmer Score: 

          
Start: 4384946Stop: 4386760

          
Length: 1815


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4423 translation of PA4423Homolog Bit Score 1169.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2008 (ORF: BLASTX 832.0), t_PA4423 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGCTCGCCTGCGTCCGCTTTCTGCTCTGATCCTGGCCGGTCTGCTGACCGCCTGCGCGACCTCGTCC 
AATTCCGGACTGGGCGAACTTCCCCGTACGCCGAATGCCAGCATCGAGCAGTTGTTGCAACAGGCCAGCCAG 
AGCAAGCCCGAGGAAGCGGCGCTGCTGCGCCTCTCGGCAGCGGACCTTGCCTACCAGCAGAAGGACCTCGCC 
AGGTCCACCGCCATCCTGGGACAGATCCCGCTGGAAAGCCTGAAGCCGGCCCAGCAGGTCTTCGCCAGCACC 
CTGAACGCCGAACTGGCCCTCGCCCGCAGCAAGCCCAAGGCCGCCCTGCAGGCATTGCAGCATCCGAGCATG 
CAGCATCTCAGCGAGCTGCCGGTGACCCAGCAGGTTCGTACCCAGCGCGCCAAGGCCCAGGCCCTCGCCGCC 
GACGGCCAGGTCCTTGCCGCAGCCAAGGAGCGCATCTACTTCGCCCCGCTGCTCGAGGGCCCGGCGGTGATC 
GAGAACCAGGAAAAGATCTGGACCCTGGTCAGCAGCCTGCCGGTCGACCAGTTGCAACCGAGCGCCAACGAA 
GGCGACCTCAGTGGCTGGCTGGCTCTGGCCCGCATCACCAAGACCTCGCCGACCCTGCAACAACAGCAGGCC 
AGCATCGAGAGCTGGCAACAGCAGAACCCCGAGCACCCGGCGGCCAAGCACTTGCCGGCGGCGCTGGAGAAA 
CTCAAGACGCTGTCCCAGCAGCCGCTGACCCGCATCGCCCTCCTGCTACCCCAGCAGGGGCAGTTGGCCAAC 
GTCGCCCGGGCCCTGCAGGACGGCTTCCTCGCCGCCCACTTCCAGGCCCAGCAGGCCGGCCAGAACCCTCCT 
TCGATCAAACTCTACGACAGTACCCAGGTGCGCTCGCTAGATGACTTCTACCGCCAGGCCCAGGCCGATGGC 
GTCGAACTGGTCGTCGGTCCACTGGAGAAGCCGCTGGTCAAGCAACTCGCCAGCCGCGAGCAACTGCCGATC 
ACCACCCTCGCACTCAACTACAGCGACAACAGCCAGGAAGGCCCGGCGCAGCTGTTCCAGTTCGGCCTCGCC 
GCCGAGGACGAAGCGCGCGCGGTGGCCAGCCGGGCCTGGGGCGACGGCATGCGCCGGGCCGTGGCGCTGGTG 
CCGCGCGGCGAATGGGGCGACCGCGTGCTGGCCGCCTTCAGCCAGAGCTGGCAGTCCGCGGGCGGCAGCCTG 
ATCGCCGCCGAGCATGTCGACCAGCCGGTACAACTGGCGCAACAGATCGCCGACCTGCTGCAACTGCGCCAG 
AGCGAAGGCCGCGCCCAGCGCCTGCAGGGCGCCCTCGGCAGCCAGATCGCCACCCAGCCGTCGCGCCGCCAG 
GACATCGACTTCGTGTTCCTCGCCGCTACCCCGCAGCAGGCCCGCCAGATCAAGCCGACCCTGGCCTTCCAA 
TACGCCGGCGACCTTCCGGTCTACGCCACTTCGCACCTCTACACCGGGACCAACAACCCGACCCAGGACCAG 
GACCTCAACGGCATCCGCTTCTGCGAGACCCCGTGGCTGCTCAACCCCAGCGACCCGACCCGCCAGCAGGTC 
GCCGCCCAATGGCCCCAGGCCAACGGCAGCATGGGCCGCCTCTACGCCATGGGCGTCGACGCCTACCGCCTC 
GCTCCGCGACTGCCTGAACTGAAGGCCGTGCCGAGCCTGCAGATCGACGGCCTGACCGGTACCCTGAGCCTG 
AATCCGACCCAACGTATCGAACGCCAGTTGCAATGGGCCGAGTTCCGCAATGGCCAGGTCCAGCCGCTGGGG 
ACCAGCAGCTTTTGA