ViewGene
Locus Name:
GeneID:
Location:

GeneID:5139
TrivialName: PA14_10360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10360
PAO1 Ortholog Locus:PA4141
Sequence Length:300
Protein Length:99
Start: 895379
Stop: 895080
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07528.1|AE004830_9 (AE004830) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 98/99 (98%), Positives = 99/99 (100%)
Sequence:
ATGAAAGAACTCAATGACATTGAAGTCACCTGCGTTTCGGGTGGAACTCTTTCCGGCATGATCGTAGGCGCC
GTCGACGGCGCCGCGACGGGCATGGCAATCGGTGGGAAATGGGGCGGTGCCGGCGGCTTCGGCTTCGGCGCA
CTTTCCCAGTTGGTCGGCCTGGTCGTGCCAACCGCGATGGGCGCTATTGCCGGGGGCACGGTCGGTCTCTTC
ACCAATGCGGAAACGGCTGTCGGTTACTTGGGCCAATACCGGGAAAACTTCGGTCCCGGTGATGTAGGCCGC
ACCACCATCTAA
Translation:
MKELNDIEVTCVSGGTLSGMIVGAVDGAATGMAIGGKWGGAGGFGFGALSQLVGLVVPTAMGAIAGGTVGLF
TNAETAVGYLGQYRENFGPGDVGRTTI*
AnnotationID:5144GeneID:5139
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 15:03:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4141
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10278




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27422




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5139
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7547
                           PA4141_tr
                           translation of PA4141
                           99
                           98.98
                           99.99
                           0
                           510.0
     

     
     
193942
                           gb|AAG07528.1|AE004830_9
                           (AE004830) hypothetical protein PA4141 [Pseudomonas aeruginosa PAO1]
                           99
                           98.98
                           99.99
                           0
                           510.0
     

     






      

          
GC ORFID: 48141How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4141Glimmer Score: 

          
Start: 4058558Stop: 4058857

          
Length: 300


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4141 translation of PA4141Homolog Bit Score 201.0

          
Other Homologs:  t_PA4141 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGAACTCAATGACATTGAAGTCACCTGCGTTTCGGGTGGAACTCTTTCCGGCATGATCGTAGGCGCC 
GTCGACGGCGCCGCGACGGGCATGGCAATCGGTGGGAAATGGGGCGGTGCCGGCGGCTTCGGCTTCGGCGCA 
CTTTCCCAGTTGGTCGGCCTGGTCGTGCCAACCGCGATGGGCGCTATTGCCGGGGGCACGGTCGGTCTCTTC 
ACCAATGCGGAAACGGCTGTCGGTTACTTGGGCCAATACCGGGAAAACTTCGGTCCCGGTGATGTAGGCCGC 
ACCACCATCTAA