ViewGene
Locus Name:
GeneID:
Location:

GeneID:5138
TrivialName: PA14_20610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20610
PAO1 Ortholog Locus:
Sequence Length:348
Protein Length:115
Start: 1774207
Stop: 1773860
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06749.1|AE004758_6 (AE004758) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 100/115 (86%), Positives = 107/115 (93%)
Sequence:
ATGGCAACACAAGGAGTGTTCACCCTTCCCGCCAACACCCAGTTCGGCGTCACCGCCTTCGCCAACTCGGCC
GGAACCCAGACGGTGAACGTGCAGGTCAACAACGAAACCGTCGCGACCTTCACCGGGCAAAGCACCAACAAC
GCCATCATCGGCAGCAAGGTGCTCAACTCGGGCGGCGGCGGCAAGGTGCAGATCCTGGTCAGCGTCAATGGC
CGCTCTTCGGATCTGGTTTCGGCGCAGGTGATCCTGGCCAATGAGCTGAACTTCGCCCTGGTCGGCTCTGAA
GACAGCACCGACAACGACTACAACGACGCCGTCGTGGTGATCAACTGGCCGCTCGGCTAG
Translation:
MATQGVFTLPANTQFGVTAFANSAGTQTVNVQVNNETVATFTGQSTNNAIIGSKVLNSGGGGKVQILVSVNG
RSSDLVSAQVILANELNFALVGSEDSTDNDYNDAVVVINWPLG*
AnnotationID:5143GeneID:5138
AnnotatorUID: danlee
Modification Date/Time: 2006-02-09 16:04:37
Gene Name:lecB
Confidence Code:1
GeneProduct:fucose-binding lectin PA-IIL
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:LecB
Functional Category Confidence Code:5
COGs:pfam07472
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9949495|gb|AAG06749.1|  hypothetical protein PA3361 [Pseudomonas aeruginosa PAO1]
 gi|15598557|ref|NP_252051.1|  hypothetical protein PA3361 [Pseudomonas aeruginosa PAO1]
Length=115

 Score =  174 bits (440),  Expect = 1e-42
 Identities = 100/115 (86%), Positives = 107/115 (93%), Gaps = 0/115 (0%)






 
Structural Features:
pfam07472, PA-IIL, Fucose-binding lectin II (PA-IIL). In Pseudomonas aeruginosa the 
fucose-binding lectin II (PA-IIL) contributes to the pathogenic virulence of the bacterium.
             CD-Length = 106 residues, 100.0% aligned
             Score =  103 bits (257), Expect = 7e-24






   
Genomic Context:






   
Comment:


















    ReferenceID:10276




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17050




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:PA3361_CDS.cgi


    		




 
URL:

















    ReferenceID:27420




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5138
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7546
                           PA3361_tr
                           translation of PA3361
                           115
                           86.95
                           93.04
                           0
                           511.0
     

     
     
193939
                           gb|AAG06749.1|AE004758_6
                           (AE004758) hypothetical protein PA3361 [Pseudomonas aeruginosa PAO1]
                           115
                           86.95
                           93.04
                           0
                           511.0
     

     
     
193940
                           emb|CAD17076.1|
                           (AL646074) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           115
                           68.69
                           81.73
                           1
                           407.0
     

     
     
193941
                           gb|AAQ59418.1|
                           (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           115
                           58.26
                           75.65
                           1
                           350.0
     

     






      

          
GC ORFID: 48140How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3361Glimmer Score: 

          
Start: 3179725Stop: 3180072

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3361 translation of PA3361Homolog Bit Score 201.0

          
Other Homologs:  t_PA3361 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAACACAAGGAGTGTTCACCCTTCCCGCCAACACCCAGTTCGGCGTCACCGCCTTCGCCAACTCGGCC 
GGAACCCAGACGGTGAACGTGCAGGTCAACAACGAAACCGTCGCGACCTTCACCGGGCAAAGCACCAACAAC 
GCCATCATCGGCAGCAAGGTGCTCAACTCGGGCGGCGGCGGCAAGGTGCAGATCCTGGTCAGCGTCAATGGC 
CGCTCTTCGGATCTGGTTTCGGCGCAGGTGATCCTGGCCAATGAGCTGAACTTCGCCCTGGTCGGCTCTGAA 
GACAGCACCGACAACGACTACAACGACGCCGTCGTGGTGATCAACTGGCCGCTCGGCTAG