ViewGene
Locus Name:
GeneID:
Location:

GeneID:5137
TrivialName: PA14_62880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62880
PAO1 Ortholog Locus:PA4753
Sequence Length:315
Protein Length:104
Start: 5610547
Stop: 5610861
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08139.1|AE004889_2 (AE004889) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGGCGCTCACTCAAGAGCAGAAGAAACAGTTCAAATCTATCGGTCACCACCTGAAACCGGTATTGATCGTA
GCCGAGAACGGCTTGACCGAAGGCGTTCTCGCCGAACTCGAGCGCGCACTCAACGATCACGAACTGATCAAG
GTGAAACTGGCGCTGGCCGAGCGCGACGATCGCCGCGCCCTGCTCGACGAACTCTGCGCGCAGTCGCGCAGC
GACCTGGTGCAAAGCATCGGCAAGATGGCGCTGGTCTATCGGAAGAACCCGAAGCCGAACAAGAATCTCTCG
AACATCAGCCGTTTCGCCGGCATCTGA
Translation:
MALTQEQKKQFKSIGHHLKPVLIVAENGLTEGVLAELERALNDHELIKVKLALAERDDRRALLDELCAQSRS
DLVQSIGKMALVYRKNPKPNKNLSNISRFAGI*
AnnotationID:5142GeneID:5137
AnnotatorUID: diggins
Modification Date/Time: 2005-05-18 20:08:24
Gene Name:
Confidence Code:3
GeneProduct:putative RNA-binding protein
Cell Localization:()
Synonyms:yhbY
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC60728.1| (AP005081) putative RNA-binding protein containing KH domain
          [Vibrio parahaemolyticus]
          Length = 98

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 40/88 (45%), Positives = 66/88 (75%)

>gb|AAL22168.1| (AE008852) putative RNA-binding protein [Salmonella typhimurium
          LT2]
          Length = 110

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 40/86 (46%), Positives = 61/86 (70%)

>gb|AAN82377.1|AE016767_137 (AE016767) Hypothetical protein yhbY [Escherichia coli CFT073]
          Length = 97

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 39/86 (45%), Positives = 61/86 (70%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10274




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27418




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37644




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5137_cdd.html


    		




 
URL:

















    ReferenceID:38148




  
Author/Investigator(s):
        Ostheimer GJ, Barkan A, Matthews BW.





  
Title:
        Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins.




  
PubMed:
        12429100


MedLine:
        




    
Source:
Structure (Camb). 2002 Nov;10(11):1593-601.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=22317564&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5137
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7545
                           PA4753_tr
                           translation of PA4753
                           104
                           99.99
                           99.99
                           0
                           515.0
     

     
     
193935
                           gb|AAG08139.1|AE004889_2
                           (AE004889) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           515.0
     

     
     
193936
                           gb|AAB39253.1|
                           (U81259) orf2 [Pseudomonas aeruginosa]
                           104
                           99.99
                           99.99
                           0
                           515.0
     

     
     
193937
                           gb|AAO57947.1|
                           (AE016872) conserved hypothetical protein TIGR00253 [Pseudomonas syringae pv. tomato str. DC3000]
                           104
                           69.23
                           79.80
                           1
                           364.0
     

     
     
193938
                           gb|AAN70292.1|AE016670_2
                           (AE016791) conserved hypothetical protein TIGR00253 [Pseudomonas putida KT2440]
                           129
                           51.93
                           62.79
                           27
                           341.0
     

     






      

          
GC ORFID: 48139How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4753Glimmer Score: 

          
Start: 4874227Stop: 4874541

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4753 translation of PA4753Homolog Bit Score 202.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5580 (ORF: BLASTX 147.0), t_PA4753 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCTCACTCAAGAGCAGAAGAAACAGTTCAAATCTATCGGTCACCACCTGAAACCGGTATTGATCGTA 
GCCGAGAACGGCTTGACCGAAGGCGTTCTCGCCGAACTCGAGCGCGCACTCAACGATCACGAACTGATCAAG 
GTGAAACTGGCGCTGGCCGAGCGCGACGATCGCCGCGCCCTGCTCGACGAACTCTGCGCGCAGTCGCGCAGC 
GACCTGGTGCAAAGCATCGGCAAGATGGCGCTGGTCTATCGGAAGAACCCGAAGCCGAACAAGAATCTCTCG 
AACATCAGCCGTTTCGCCGGCATCTGA