ViewGene

Locus Name:
GeneID:
Location:

GeneID:5136
TrivialName: PA14_62660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62660
PAO1 Ortholog Locus:PA4736
Sequence Length:294
Protein Length:97
Start: 5593775
Stop: 5594068
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08122.1|AE004887_6 (AE004887) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 97/97 (100%), Positives = 97/97 (100%)
Sequence:
TTGCACAAGCGATTCGCCGCCCTCGCGGCCCCCCTGCTCTACCTTGCCTGCGCGAGCGCGCAGGCCGACACC
ATGCGTTGCGGCAGTGCGCTGGTCAGCGTCGGCGACCGGGCCTTCGAAGTACAGCAAAAGTGCGGCGATCCG
GATCACCGCGACGACGTCGGCTATACCCTGGGCAGCTACGATCGGCGGGAATTCAAGGTCGAGGAGTGGGTG
TACGGCCCGCGCAACGGCGTGACCTACATCCTGACCTTCGAAGCCAACAAGCTGAAACGCATCGAGTTCAAG
CGTTGA
Translation:
MHKRFAALAAPLLYLACASAQADTMRCGSALVSVGDRAFEVQQKCGDPDHRDDVGYTLGSYDRREFKVEEWV
YGPRNGVTYILTFEANKLKRIEFKR*
AnnotationID:5141GeneID:5136
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 07:07:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4736
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15256
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27416
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5136

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7544 PA4736_tr translation of PA4736 97 99.99 99.99 0 513.0
193934 gb|AAG08122.1|AE004887_6 (AE004887) hypothetical protein PA4736 [Pseudomonas aeruginosa PAO1] 97 98.96 99.99 0 511.0
GC ORFID: 48138How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4736Glimmer Score:
Start: 4857455Stop: 4857748
Length: 294
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4736 translation of PA4736Homolog Bit Score 202.0
Other Homologs: t_PA4736 (ORF: GLIMMER)
GC ORF Sequence
TTGCACAAGCGATTCGCCGCCCTCGCGGCCCCCCTGCTCTACCTTGCCTGCGCGAGCGCGCAGGCCGACACC
ATGCGTTGCGGCAGTGCGCTGGTCAGCGTCGGCGACCGGGCCTTCGAAGTACAGCAAAAGTGCGGCGATCCG
GATCACCGCGACGACGTCGGCTATACCCTGGGCAGCTACGATCGGCGGGAATTCAAGGTCGAGGAGTGGGTG
TACGGCCCGCGCAACGGCGTGACCTACATCCTGACCTTCGAAGCCAACAAGCTGAAACGCATCGAGTTCAAG
CGTTGA