ViewGene

Locus Name:
GeneID:
Location:

GeneID:5134
TrivialName: PA14_08980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08980
PAO1 Ortholog Locus:PA4250
Sequence Length:306
Protein Length:101
Start: 765452
Stop: 765757
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07638.1|AE004841_16 (AE004841) 30S ribosomal protein S14 [Pseudomonas aeruginosa PAO1]
Identities = 101/101 (100%), Positives = 101/101 (100%)
Sequence:
ATGGCTAAAGAGAGCATGAAGAACCGCGAGCTGAAGCGTCAGCTGACGGTAGCCAAGTACGCCAAGAAGCGT
GCCGAGCTGAAAGCGATCATCGCTAATCCGAACTCCTCTGCGGAAGAGCGTTGGAATGCCCAGGTCGCCCTG
CAGAAGCAACCGCGTGACGCCAGCGCCAGCCGCCTGCGTAACCGTTGCCGCCTGACCGGCCGTCCGCACGGC
TTCTACCGCAAGTTCGGCCTGAGCCGTAACAAGCTGCGCGAAGCCGCCATGCGCGGCGACGTACCGGGCCTG
GTGAAAGCCAGCTGGTAA
Translation:
MAKESMKNRELKRQLTVAKYAKKRAELKAIIANPNSSAEERWNAQVALQKQPRDASASRLRNRCRLTGRPHG
FYRKFGLSRNKLREAAMRGDVPGLVKASW*
AnnotationID:5139GeneID:5134
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 11:11:46
Gene Name:rpsN
Confidence Code:2
GeneProduct:30S ribosomal protein S14
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00253,COG0199
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54181.1| (AE016858) ribosomal protein S14 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 101

 Score =  177 bits (448), Expect = 1e-44
 Identities = 87/101 (86%), Positives = 93/101 (92%)

>gb|AAN66097.1|AE016238_15 (AE016775) ribosomal protein S14 [Pseudomonas putida KT2440]
          Length = 101

 Score =  172 bits (435), Expect = 4e-43
 Identities = 87/101 (86%), Positives = 92/101 (91%)

>gb|AAP19374.1| (AE016992) 30S ribosomal subunit protein S14 [Shigella flexneri 2a
           str. 2457T]
          Length = 101

 Score =  140 bits (353), Expect = 1e-33
 Identities = 70/101 (69%), Positives = 81/101 (80%)
Structural Features:
pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e. 
CD-Length = 99 residues, 100.0% aligned
Score = 91.6 bits (227), Expect = 2e-20
Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

COG0199, RpsN, Ribosomal protein S14 
[Translation, ribosomal structure and biogenesis]
CD-Length = 61 residues, 100.0% aligned
Score = 78.0 bits (192), Expect = 3e-16
Identities = 32/61 (52%), Positives = 39/61 (63%)
Genomic Context:
Comment:
ReferenceID:10268
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27412
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36534
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5134_cdd.html
URL:
ReferenceID:36725
Author/Investigator(s): Cerretti DP, Dean D, Davis GR, Bedwell DM, Nomura M.
Title: The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.
PubMed: 6222285
MedLine:
Source:
Nucleic Acids Res. 1983 May 11;11(9):2599-616.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6222285
Homologs By Global Alignment
Gene ID:5134

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7542 PA4250_tr translation of PA4250 101 99.99 99.99 0 515.0
193872 gb|AAG07638.1|AE004841_16 (AE004841) 30S ribosomal protein S14 [Pseudomonas aeruginosa PAO1] 101 99.99 99.99 0 515.0
193873 gb|AAO54181.1| (AE016858) ribosomal protein S14 [Pseudomonas syringae pv. tomato str. DC3000] 101 86.13 92.07 0 448.0
193874 gb|AAN66097.1|AE016238_15 (AE016775) ribosomal protein S14 [Pseudomonas putida KT2440] 101 86.13 91.08 0 435.0
193877 gb|AAN53329.1|AE015473_16 (AE015473) ribosomal protein S14 [Shewanella oneidensis MR-1] 101 71.28 79.20 0 353.0
GC ORFID: 48136How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4250Glimmer Score:
Start: 4188487Stop: 4188182
Length: 306
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4250 translation of PA4250Homolog Bit Score 202.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5198 (ORF: BLASTX 176.0), t_PA4250 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTAAAGAGAGCATGAAGAACCGCGAGCTGAAGCGTCAGCTGACGGTAGCCAAGTACGCCAAGAAGCGT
GCCGAGCTGAAAGCGATCATCGCTAATCCGAACTCCTCTGCGGAAGAGCGTTGGAATGCCCAGGTCGCCCTG
CAGAAGCAACCGCGTGACGCCAGCGCCAGCCGCCTGCGTAACCGTTGCCGCCTGACCGGCCGTCCGCACGGC
TTCTACCGCAAGTTCGGCCTGAGCCGTAACAAGCTGCGCGAAGCCGCCATGCGCGGCGACGTACCGGGCCTG
GTGAAAGCCAGCTGGTAA