ViewGene

Locus Name:
GeneID:
Location:

GeneID:5132
TrivialName: PA14_11010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11010
PAO1 Ortholog Locus:PA4090
Sequence Length:291
Protein Length:96
Start: 953062
Stop: 952772
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07477.1|AE004825_6 (AE004825) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/96 (100%), Positives = 96/96 (100%)
Sequence:
ATGTTCCGCTCCACCTCCCATGTCCGTACCGAATCGGCCGCACGCTACGTCAATCGCCTGTGCAAGCACTGG
GGCCACAAGTTCGAAGTCGAACTCACTCCCGAGCGCGGCTTCATCGACTTCGGCGACTCCAACTGCGAGCTG
CTCGCCCACCCCGACCATGTCCTGATGATTCTCAACAGCCCCGACGAGGACAGCCTCGCCCACATGCAGAAC
GTGGTCGCCGATCACCTGCAACGCATGGCCAACAGCGAAAGCCTGGAGATTGCCTGGCAGCCCGCCGAAAGC
TGA
Translation:
MFRSTSHVRTESAARYVNRLCKHWGHKFEVELTPERGFIDFGDSNCELLAHPDHVLMILNSPDEDSLAHMQN
VVADHLQRMANSESLEIAWQPAES*
AnnotationID:5137GeneID:5132
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 09:09:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4090
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10264
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27408
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36526
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5132_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5132

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7540 PA4090_tr translation of PA4090 96 99.99 99.99 0 514.0
193721 gb|AAG07477.1|AE004825_6 (AE004825) hypothetical protein PA4090 [Pseudomonas aeruginosa PAO1] 96 99.99 99.99 0 514.0
GC ORFID: 48134How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4090Glimmer Score:
Start: 4000875Stop: 4001165
Length: 291
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4090 translation of PA4090Homolog Bit Score 202.0
Other Homologs: t_PA4090 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCCGCTCCACCTCCCATGTCCGTACCGAATCGGCCGCACGCTACGTCAATCGCCTGTGCAAGCACTGG
GGCCACAAGTTCGAAGTCGAACTCACTCCCGAGCGCGGCTTCATCGACTTCGGCGACTCCAACTGCGAGCTG
CTCGCCCACCCCGACCATGTCCTGATGATTCTCAACAGCCCCGACGAGGACAGCCTCGCCCACATGCAGAAC
GTGGTCGCCGATCACCTGCAACGCATGGCCAACAGCGAAAGCCTGGAGATTGCCTGGCAGCCCGCCGAAAGC
TGA