ViewGene

Locus Name:
GeneID:
Location:

GeneID:5131
TrivialName: PA14_29720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29720
PAO1 Ortholog Locus:PA2658
Sequence Length:315
Protein Length:104
Start: 2573581
Stop: 2573895
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06046.1|AE004694_9 (AE004694) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGAAGTGGCTCATGCGCTACGCCGGGATCGTCGCACTGGTCCTGGCGGTCATCAGCCTCGAGGCGATGGCG
CGCGACCTGGACCAGGACGAGGTCCTGCGCCTGCGCCAGGACGGTGTGATACAGCCGCTCGAATCCCTCATG
CAGGAAGCCCTGGGGCGTTACCCCGGGGCGCGCCTGCTGGAGGTCGAGCTGGAAGAGGAAGACGACGTCTAT
GTCTACGAGGTGGAACTGCTCACCCGCGACGGCGTCGTGCGTGAACTGGAACTGGATGCCCGCAACGGCCGC
ATCCTGAAGGACGAGGAAGACGACTGA
Translation:
MKWLMRYAGIVALVLAVISLEAMARDLDQDEVLRLRQDGVIQPLESLMQEALGRYPGARLLEVELEEEDDVY
VYEVELLTRDGVVRELELDARNGRILKDEEDD*
AnnotationID:5136GeneID:5131
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 12:12:23
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA2658
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO56860.1| (AE016868) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 101

 Score =  103 bits (258), Expect = 1e-22
 Identities = 52/82 (63%), Positives = 65/82 (79%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:10262
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27406
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36354
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5131_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5131

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7539 PA2658_tr translation of PA2658 104 99.99 99.99 0 513.0
193718 gb|AAG06046.1|AE004694_9 (AE004694) hypothetical protein PA2658 [Pseudomonas aeruginosa PAO1] 104 99.99 99.99 0 513.0
193719 gb|AAN67959.1|AE016428_7 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 105 66.66 80.00 2 322.0
193720 gb|AAO56860.1| (AE016868) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 104 55.76 69.23 3 259.0
GC ORFID: 48133How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2658Glimmer Score:
Start: 2380345Stop: 2380031
Length: 315
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2658 translation of PA2658Homolog Bit Score 202.0
Other Homologs: psyr_15may02_Scaffold17_revised_gene2788 (ORF: BLASTX 112.0), t_PA2658 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGTGGCTCATGCGCTACGCCGGGATCGTCGCACTGGTCCTGGCGGTCATCAGCCTCGAGGCGATGGCG
CGCGACCTGGACCAGGACGAGGTCCTGCGCCTGCGCCAGGACGGTGTGATACAGCCGCTCGAATCCCTCATG
CAGGAAGCCCTGGGGCGTTACCCCGGGGCGCGCCTGCTGGAGGTCGAGCTGGAAGAGGAAGACGACGTCTAT
GTCTACGAGGTGGAACTGCTCACCCGCGACGGCGTCGTGCGTGAACTGGAACTGGATGCCCGCAACGGCCGC
ATCCTGAAGGACGAGGAAGACGACTGA