ViewGene
Locus Name:
GeneID:
Location:

GeneID:5130
TrivialName: PA14_32230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32230
PAO1 Ortholog Locus:PA2508
Sequence Length:291
Protein Length:96
Start: 2801421
Stop: 2801711
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05896.1|AE004678_2 (AE004678) muconolactone delta-isomerase [Pseudomonas aeruginosa PAO1]
Identities = 96/96 (100%), Positives = 96/96 (100%)
Sequence:
ATGCTGTTCCACGTGAAGATGACCGTGAAGTTGCCCGTCGACATGGACCCGCAGCAGGCCGAGCGGCTCAAG
GCCGAGGAGAAGGAAATGGCCCAGCGCCTCCAGCGCGAGGGCAGCTGGCGGCACCTCTGGCGGATCGCCGGG
CACTACGCCAACTACAGCCTGTTCGACCTGCCCAGCGTCGAGGCGCTGCACGACACCCTGACCCGGCTGCCG
CTGTTTCCCTACATGGACATCGAGATCGACGGGCTTTGCCGGCATCCCTCGTCGATCCATGCCGACGACCGC
TGA
Translation:
MLFHVKMTVKLPVDMDPQQAERLKAEEKEMAQRLQREGSWRHLWRIAGHYANYSLFDLPSVEALHDTLTRLP
LFPYMDIEIDGLCRHPSSIHADDR*
AnnotationID:5135GeneID:5130
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 08:08:08
Gene Name:catC
Confidence Code:1
GeneProduct:muconolactone delta-isomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4829,pfam02426
Secondary Functional Category(ies):central intermediary metabolism
EC Number:5.3.3.4
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK52297.1| (AY026914) putative muconolactone delta-isomerase CatC
          [Pseudomonas putida]
          Length = 96

 Score =  202 bits (515), Expect = 2e-52
 Identities = 96/96 (100%), Positives = 96/96 (100%)

>gb|AAC31768.1| (U77659) muconolactone isomerase [Acinetobacter lwoffii K24]
          Length = 96

 Score =  143 bits (360), Expect = 2e-34
 Identities = 65/96 (67%), Positives = 79/96 (82%)

>emb|CAE40603.1| (BX640411) methylmuconolactone isomerase [Bordetella pertussis]
          Length = 91

 Score =  120 bits (300), Expect = 2e-27
 Identities = 53/91 (58%), Positives = 70/91 (76%)







 
Structural Features:
COG4829, CatC1, Muconolactone delta-isomerase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 98 residues, 100.0% aligned
Score =  149 bits (377), Expect = 5e-38
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

pfam02426, MIase, Muconolactone delta-isomerase. 
CD-Length = 91 residues, 100.0% aligned
Score =  142 bits (358), Expect = 8e-36
Identities = 57/91 (62%), Positives = 71/91 (78%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10260




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27404




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33056




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5130_cdd.html


    		




 
URL:

















    ReferenceID:34504




  
Author/Investigator(s):
        Kukor JJ, Olsen RH, Ballou DP.





  
Title:
        Cloning and expression of the catA and catBC gene clusters from Pseudomonas aeruginosa PAO.




  
PubMed:
        3139626


MedLine:
        




    
Source:
J Bacteriol. 1988 Oct;170(10):4458-65.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3139626









           
Homologs By Global Alignment 

           

       



     
Gene ID:5130
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7538
                           PA2508_tr
                           translation of PA2508
                           96
                           99.99
                           99.99
                           0
                           515.0
     

     
     
193687
                           gb|AAG05896.1|AE004678_2
                           (AE004678) muconolactone delta-isomerase [Pseudomonas aeruginosa PAO1]
                           96
                           99.99
                           99.99
                           0
                           515.0
     

     
     
193688
                           gb|AAK52297.1|
                           (AY026914) putative muconolactone delta-isomerase CatC [Pseudomonas putida]
                           96
                           99.99
                           99.99
                           0
                           515.0
     

     
     
193691
                           dbj|BAA23629.1|
                           (D50858) muconolactone isomerase [Pseudomonas putida]
                           96
                           86.45
                           95.83
                           0
                           463.0
     

     
     
193690
                           gb|AAN69311.1|AE016568_6
                           (AE016788) muconolactone isomerase [Pseudomonas putida KT2440]
                           96
                           86.45
                           95.83
                           0
                           463.0
     

     






      

          
GC ORFID: 48132How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2508Glimmer Score: 

          
Start: 2152503Stop: 2152213

          
Length: 291


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2508 translation of PA2508Homolog Bit Score 202.0

          
Other Homologs:  t_PA2508 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGTTCCACGTGAAGATGACCGTGAAGTTGCCCGTCGACATGGACCCGCAGCAGGCCGAGCGGCTCAAG 
GCCGAGGAGAAGGAAATGGCCCAGCGCCTCCAGCGCGAGGGCAGCTGGCGGCACCTCTGGCGGATCGCCGGG 
CACTACGCCAACTACAGCCTGTTCGACCTGCCCAGCGTCGAGGCGCTGCACGACACCCTGACCCGGCTGCCG 
CTGTTTCCCTACATGGACATCGAGATCGACGGGCTTTGCCGGCATCCCTCGTCGATCCATGCCGACGACCGC 
TGA