ViewGene
Locus Name:
GeneID:
Location:

GeneID:513
TrivialName: PA14_22370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22370
PAO1 Ortholog Locus:PA3233
Sequence Length:1800
Protein Length:599
Start: 1947679
Stop: 1949478
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06621.1|AE004746_5 (AE004746) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 597/599 (99%), Positives = 597/599 (99%)
Sequence:
ATGCCTGACAGTTTCAACTTCGCCTCGCCACCCTTCGACCAGTTGCGCCCCCATCAACGCGAGACCTTCAAG
CAGGCTCTCAGCGTCGGCTACTATGCGCCGGGGGAAACCTTGCTGGAGGCCGGCTCGGCGGTCCCCGGGCTG
TTCGTCCTGCTCAAGGGCGTGGTCGAGGAGCGCGGCGACGACGGGCGGGTATTCGCCCAATACGCCGCGGAC
GACCTGTTCGACGTCCGCGGGCTGTTCTCCGGCAGCAGCAAGCACCGCTACCTGGCGATCGAGGAAAGCATC
GTCTACGAGTTGCCGGCCAGTTGCTTCCACCAGTTGTGCGGGGAGAATCCGGGGTTCGCCCGCTTCTTCCAG
GCCGACCTGGCGGCCAAGCGCCAGTTGGCCCAGCGCGATGGGCAGAACCTGGCCGAGTTCATCCTTACCCGC
ATCGCCCGCGAGCACTTGCTGCCGGCGCTGGAGGTGGAGGCCTCGCTGTCCCTCGGCGACGCCGCGCGCCTG
CAATTGAGCCACGGCGCCGATGCCCTGCTGGTGCGGCTGGAGAGGGACGGGCCCGAGCTCGGCATCGTCACC
CGCACCGACCTCATGAGCGCGCACTTCCGCGACGGGCGCAGCGAGCTGGAGGCGATCGGGCCGTTGGCCCAT
GGTCCGCTGGCCAGCGTCGAACTGGGCGATTTCCTGTTCGACGCGATGATCCTCATGACGCGCCAGCGTATC
GAGCGGGTCGCGGTCACCGAGGACGGTCAGGTGATCGGCCTGTTGCACCTGACCCAGGTGCTCAGCCTGTTC
TCCACCCATTCCCACGTCCTGGCGCTGCGCATCGCCCGCGCCGACGACCTCGGCGACCTGCGCCGCTGCGCG
GAAACCCTGGACACCCTGATCGCTACCCTGGCCGGCAACGGTATCCGCCTGCGCTTCATCATGCAGCTGGTC
AGCGCGCTCAACGAGCAATTGCTCGAACGGCTTTTCGAATTGTTGCTGCCGCCAACCCTGCGCGGGCGCTGC
TGCTTGCTGGTGATGGGCAGCGAAGGACGCGGCGAGCAGTTGCTGAAGACCGACCAGGACAATGCCCTGGTC
CTGGCCGACGATCTGCCGCAGGAACAGGCCCTGGCGATGATGCAGCGCTTCAGCGCGGCCTTGCTGGAGTTC
GGTTATCCGCCCTGTCCCGGAGGGGTGATGGCCAGTCGGCCGGAATGGTGCAAGCCGCTGGCGGCCTGGCAG
GCGGAGCTGCGCGGGACTCTGCTGGAGGGCAAGCCGGAGCAGCTGTTGCGCCTGTCGATCCTGGCCGATGCC
TGGCCGGTGGCCGGCAACCTGCAGCTGTTCGAGCCGTTGCGTCGGCAACTGCGCGGTTTCGCCGATGGCGGC
GAGCGCTGGCTGGCGGATATCGCGGCAGCGGCCCTGCAATTCGATACGCCGCTGACCTTCCTCGGCCAACTG
AAGACCcagGACGCCCGCCTCGATCTCAAGCGCGGCGGGATCTTCCCCATCGTCCACGGCATCCGCACCCTG
GCCCTGCGCGAAGGCCTGGAAACCCGCGGGACCCTGGCACGGATCGAGGCGCTGAAGCGACACAAGGTCCTC
GAAGCGCGCCTGGCGGACGACCTGAGCGAGTCTTTCGAGCTGTTCCTGCAACTGCGCCTGACCCGCCAGTTG
GCCGGCCAACGCGACGGTCGCCAGCAGGGCCTGGACGTCAGCGGCATGAGCCGCCACGATCGCGACATGCTG
CGCTACGGCCTGCATGTGGTGAAGAAGTTCAAGCAGAGCGTGGCCCGTCAATTCCACCTGGAGACCCGATGA
Translation:
MPDSFNFASPPFDQLRPHQRETFKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAAD
DLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTR
IAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAH
GPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCA
ETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALV
LADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADA
WPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTL
ALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDML
RYGLHVVKKFKQSVARQFHLETR*
AnnotationID:522GeneID:513
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:28
Gene Name:
Confidence Code:3
GeneProduct:putative signal-transduction protein
Cell Localization:()
Synonyms:PA3233
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2905
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO09696.1|AE016801_15 (AE016801) Predicted signal-transduction protein [Vibrio vulnificus
           CMCP6]
          Length = 602

 Score =  474 bits (1221), Expect = e-133
 Identities = 259/601 (43%), Positives = 368/601 (61%), Gaps = 14/601 (2%)






 
Structural Features:
 COG2905, Predicted signal-transduction protein containing cAMP-binding 
and CBS domains [Signal transduction mechanisms]
CD-Length = 610 residues,  99.5% aligned
Score =  725 bits (1873), Expect = 0.0
Identities = 292/608 (48%), Positives = 372/608 (61%), Gaps = 12/608 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1029




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18171




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32310




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:513_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:513
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
904
                           PA3233_tr
                           translation of PA3233
                           599
                           99.66
                           99.66
                           0
                           3025.0
     

     
     
36741
                           gb|AAG06621.1|AE004746_5
                           (AE004746) hypothetical protein PA3233 [Pseudomonas aeruginosa PAO1]
                           599
                           99.66
                           99.66
                           0
                           3025.0
     

     
     
36742
                           gb|AAF93474.1|
                           (AE004118) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           611
                           44.18
                           61.86
                           16
                           1308.0
     

     
     
36743
                           dbj|BAC61139.1|
                           (AP005083) conserved hypothetical protein [Vibrio parahaemolyticus]
                           612
                           43.62
                           61.60
                           17
                           1292.0
     

     
     
36744
                           dbj|BAC95895.1|
                           (AP005342) predicted signal-transduction protein [Vibrio vulnificus YJ016]
                           618
                           42.71
                           60.35
                           22
                           1262.0
     

     






      

          
GC ORFID: 43515How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3233Glimmer Score: 

          
Start: 3006252Stop: 3004453

          
Length: 1800


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3233 translation of PA3233Homolog Bit Score 1169.0

          
Other Homologs:  t_PA3233 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGACAGTTTCAACTTCGCCTCGCCACCCTTCGACCAGTTGCGCCCCCATCAACGCGAGACCTTCAAG 
CAGGCTCTCAGCGTCGGCTACTATGCGCCGGGGGAAACCTTGCTGGAGGCCGGCTCGGCGGTCCCCGGGCTG 
TTCGTCCTGCTCAAGGGCGTGGTCGAGGAGCGCGGCGACGACGGGCGGGTATTCGCCCAATACGCCGCGGAC 
GACCTGTTCGACGTCCGCGGGCTGTTCTCCGGCAGCAGCAAGCACCGCTACCTGGCGATCGAGGAAAGCATC 
GTCTACGAGTTGCCGGCCAGTTGCTTCCACCAGTTGTGCGGGGAGAATCCGGGGTTCGCCCGCTTCTTCCAG 
GCCGACCTGGCGGCCAAGCGCCAGTTGGCCCAGCGCGATGGGCAGAACCTGGCCGAGTTCATCCTTACCCGC 
ATCGCCCGCGAGCACTTGCTGCCGGCGCTGGAGGTGGAGGCCTCGCTGTCCCTCGGCGACGCCGCGCGCCTG 
CAATTGAGCCACGGCGCCGATGCCCTGCTGGTGCGGCTGGAGAGGGACGGGCCCGAGCTCGGCATCGTCACC 
CGCACCGACCTCATGAGCGCGCACTTCCGCGACGGGCGCAGCGAGCTGGAGGCGATCGGGCCGTTGGCCCAT 
GGTCCGCTGGCCAGCGTCGAACTGGGCGATTTCCTGTTCGACGCGATGATCCTCATGACGCGCCAGCGTATC 
GAGCGGGTCGCGGTCACCGAGGACGGTCAGGTGATCGGCCTGTTGCACCTGACCCAGGTGCTCAGCCTGTTC 
TCCACCCATTCCCACGTCCTGGCGCTGCGCATCGCCCGCGCCGACGACCTCGGCGACCTGCGCCGCTGCGCG 
GAAACCCTGGACACCCTGATCGCTACCCTGGCCGGCAACGGTATCCGCCTGCGCTTCATCATGCAGCTGGTC 
AGCGCGCTCAACGAGCAATTGCTCGAACGGCTTTTCGAATTGTTGCTGCCGCCAACCCTGCGCGGGCGCTGC 
TGCTTGCTGGTGATGGGCAGCGAAGGACGCGGCGAGCAGTTGCTGAAGACCGACCAGGACAATGCCCTGGTC 
CTGGCCGACGATCTGCCGCAGGAACAGGCCCTGGCGATGATGCAGCGCTTCAGCGCGGCCTTGCTGGAGTTC 
GGTTATCCGCCCTGTCCCGGAGGGGTGATGGCCAGTCGGCCGGAATGGTGCAAGCCGCTGGCGGCCTGGCAG 
GCGGAGCTGCGCGGGACTCTGCTGGAGGGCAAGCCGGAGCAGCTGTTGCGCCTGTCGATCCTGGCCGATGCC 
TGGCCGGTGGCCGGCAACCTGCAGCTGTTCGAGCCGTTGCGTCGGCAACTGCGCGGTTTCGCCGATGGCGGC 
GAGCGCTGGCTGGCGGATATCGCGGCAGCGGCCCTGCAATTCGATACGCCGCTGACCTTCCTCGGCCAACTG 
AAGACCcagGACGCCCGCCTCGATCTCAAGCGCGGCGGGATCTTCCCCATCGTCCACGGCATCCGCACCCTG 
GCCCTGCGCGAAGGCCTGGAAACCCGCGGGACCCTGGCACGGATCGAGGCGCTGAAGCGACACAAGGTCCTC 
GAAGCGCGCCTGGCGGACGACCTGAGCGAGTCTTTCGAGCTGTTCCTGCAACTGCGCCTGACCCGCCAGTTG 
GCCGGCCAACGCGACGGTCGCCAGCAGGGCCTGGACGTCAGCGGCATGAGCCGCCACGATCGCGACATGCTG 
CGCTACGGCCTGCATGTGGTGAAGAAGTTCAAGCAGAGCGTGGCCCGTCAATTCCACCTGGAGACCCGATGA