ViewGene

Locus Name:
GeneID:
Location:

GeneID:5128
TrivialName: PA14_03110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03110
PAO1 Ortholog Locus:PA0252
Sequence Length:288
Protein Length:95
Start: 273920
Stop: 273633
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03641.1|AE004463_6 (AE004463) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/95 (97%), Positives = 93/95 (97%)
Sequence:
ATGGGCGGCCTTCGCAAGCCCATTCGACCCGCAATGCCACGACACCCGCACACCACCCTGCTCCTCTGCCTT
TGCCTGACCCTGCCCGGTTGCGAGAGCGGCCGCAGCTACAGCTTTTCCGAGGACGCGCCTGTCACAGGCATC
CGCATCCAGCGCGACGACCGCTCGCCGTTGCAGCGCCTGCGGGACTGCGAACGCCAGGGTTGCAGCGAGCGG
CAGAAGATCGACCCGTTCACCCCCGATCCTGACTACCTGCGCGCGGAAGGCCACTTCCCGCTGCCCTGGTAA
Translation:
MGGLRKPIRPAMPRHPHTTLLLCLCLTLPGCESGRSYSFSEDAPVTGIRIQRDDRSPLQRLRDCERQGCSER
QKIDPFTPDPDYLRAEGHFPLPW*
AnnotationID:5133GeneID:5128
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0252
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10256
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27400
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5128

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7536 PA0252_tr translation of PA0252 95 97.89 97.89 0 517.0
193685 gb|AAG03641.1|AE004463_6 (AE004463) hypothetical protein PA0252 [Pseudomonas aeruginosa PAO1] 95 97.89 97.89 0 517.0
GC ORFID: 48130How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0252Glimmer Score:
Start: 6075261Stop: 6074974
Length: 288
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0252 translation of PA0252Homolog Bit Score 203.0
Other Homologs: t_PA0252 (ORF: GLIMMER)
GC ORF Sequence
ATGGGCGGCCTTCGCAAGCCCATTCGACCCGCAATGCCACGACACCCGCACACCACCCTGCTCCTCTGCCTT
TGCCTGACCCTGCCCGGTTGCGAGAGCGGCCGCAGCTACAGCTTTTCCGAGGACGCGCCTGTCACAGGCATC
CGCATCCAGCGCGACGACCGCTCGCCGTTGCAGCGCCTGCGGGACTGCGAACGCCAGGGTTGCAGCGAGCGG
CAGAAGATCGACCCGTTCACCCCCGATCCTGACTACCTGCGCGCGGAAGGCCACTTCCCGCTGCCCTGGTAA