ViewGene
Locus Name:
GeneID:
Location:

GeneID:5125
TrivialName: PA14_22340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22340
PAO1 Ortholog Locus:PA3235
Sequence Length:312
Protein Length:103
Start: 1945626
Stop: 1945937
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06623.1|AE004746_7 (AE004746) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 103/103 (100%), Positives = 103/103 (100%)
Sequence:
ATGAACGACAGCATCTACCAGCGGATTGATACCAATCCGCGCTTCAAGGAGTTGGTGGCCAAGCGAGAGCGT
TTCGCCTGGATACTTTCTTCGATCATGCTTGGCCTCTACGTGATATTCATCCTGCTGATCGCTTTCCAGCCG
CAGCTGCTGGGCGCGCGTATCAGTCCCGATTCGTCCGTGACCTGGGGCATCCCGATGGGTGTCGGACTGATC
CTTGCCGCGTTCATCCTGACCGGCCTGTACGTGCGTCGCGCCAACGGCGAGTTCGACAGCCTGAACCAGGAA
ATCCTCAAGGAGGCGCAGCAATGA
Translation:
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLI
LAAFILTGLYVRRANGEFDSLNQEILKEAQQ*
AnnotationID:5130GeneID:5125
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:29
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yjcH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3162
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC89113.1| (AJ414141) putative membrane protein [Yersinia pestis CO92]
          Length = 103

 Score =  137 bits (345), Expect = 1e-32
 Identities = 69/103 (66%), Positives = 81/103 (78%)

>gb|AAL23098.1| (AE008900) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 104

 Score =  123 bits (308), Expect = 2e-28
 Identities = 61/102 (59%), Positives = 78/102 (76%)

>gb|AAO71644.1| (AE016848) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 104

 Score =  123 bits (308), Expect = 2e-28
 Identities = 61/102 (59%), Positives = 78/102 (76%)








 
Structural Features:
COG3162, Predicted membrane protein 
CD-Length = 102 residues, 100.0% aligned
Score =  139 bits (351), Expect = 6e-35
Identities = 62/103 (60%), Positives = 73/103 (70%), Gaps = 1/103 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10250




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27394




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32308




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5125_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5125
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7533
                           PA3235_tr
                           translation of PA3235
                           103
                           99.99
                           99.99
                           0
                           516.0
     

     
     
193660
                           gb|AAG06623.1|AE004746_7
                           (AE004746) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           103
                           99.99
                           99.99
                           0
                           516.0
     

     
     
193661
                           gb|AAN67362.1|AE016362_6
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           103
                           75.72
                           89.32
                           0
                           416.0
     

     
     
193662
                           gb|AAO55143.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           103
                           73.78
                           87.37
                           0
                           405.0
     

     
     
193664
                           emb|CAC89113.1|
                           (AJ414141) putative membrane protein [Yersinia pestis CO92]
                           103
                           66.99
                           78.64
                           0
                           345.0
     

     






      

          
GC ORFID: 48127How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3235Glimmer Score: 

          
Start: 3008305Stop: 3007994

          
Length: 312


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3235 translation of PA3235Homolog Bit Score 203.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6390 (ORF: BLASTX 160.0), t_PA3235 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACAGCATCTACCAGCGGATTGATACCAATCCGCGCTTCAAGGAGTTGGTGGCCAAGCGAGAGCGT 
TTCGCCTGGATACTTTCTTCGATCATGCTTGGCCTCTACGTGATATTCATCCTGCTGATCGCTTTCCAGCCG 
CAGCTGCTGGGCGCGCGTATCAGTCCCGATTCGTCCGTGACCTGGGGCATCCCGATGGGTGTCGGACTGATC 
CTTGCCGCGTTCATCCTGACCGGCCTGTACGTGCGTCGCGCCAACGGCGAGTTCGACAGCCTGAACCAGGAA 
ATCCTCAAGGAGGCGCAGCAATGA