ViewGene
Locus Name:
GeneID:
Location:

GeneID:5124
TrivialName: PA14_55140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55140
PAO1 Ortholog Locus:PA0709
Sequence Length:297
Protein Length:98
Start: 4898168
Stop: 4897872
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04098.1|AE004506_8 (AE004506) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 98/98 (100%), Positives = 98/98 (100%)
Sequence:
ATGACCTACCACGTACTGGTTCAGTTCGACGTTCCCTCCGACAAGCGCGAAGCGTTCGCCGCGGCAGGCCTG
TTCGATGCCAATGGCTCGTTGCAGAACGAACCGGGCACCCTGCGCTTCGAGGTGATCCGCGACGAGAACAAC
CGCAACCGCTTCTACCTCGACGAGGTGTACGAAGACGAGGCGGCGTTCCTCCAGCATTGCCGCAACGAAACC
ATCGCGCGCTTCTATGAACTGATCGACAGCTATGCCTTCGGTCCGCTTTTCCTGTTCAAGGGCTACCGCGTC
GAGGGTTGA
Translation:
MTYHVLVQFDVPSDKREAFAAAGLFDANGSLQNEPGTLRFEVIRDENNRNRFYLDEVYEDEAAFLQHCRNET
IARFYELIDSYAFGPLFLFKGYRVEG*
AnnotationID:5129GeneID:5124
AnnotatorUID: danlee
Modification Date/Time: 2004-03-12 13:01:04
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0709
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1359, Uncharacterized conserved protein [Function unknown]
  CD-Length = 100 residues,  97.0% aligned
  Score = 75.8 bits (186), Expect = 2e-15






   
Genomic Context:






   
Comment:


















    ReferenceID:10248




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27392




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5124
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7532
                           PA0709_tr
                           translation of PA0709
                           98
                           99.99
                           99.99
                           0
                           517.0
     

     
     
193659
                           gb|AAG04098.1|AE004506_8
                           (AE004506) hypothetical protein PA0709 [Pseudomonas aeruginosa PAO1]
                           98
                           99.99
                           99.99
                           0
                           517.0
     

     






      

          
GC ORFID: 48126How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0709Glimmer Score: 

          
Start: 55739Stop: 56035

          
Length: 297


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0709 translation of PA0709Homolog Bit Score 203.0

          
Other Homologs:  t_PA0709 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTACCACGTACTGGTTCAGTTCGACGTTCCCTCCGACAAGCGCGAAGCGTTCGCCGCGGCAGGCCTG 
TTCGATGCCAATGGCTCGTTGCAGAACGAACCGGGCACCCTGCGCTTCGAGGTGATCCGCGACGAGAACAAC 
CGCAACCGCTTCTACCTCGACGAGGTGTACGAAGACGAGGCGGCGTTCCTCCAGCATTGCCGCAACGAAACC 
ATCGCGCGCTTCTATGAACTGATCGACAGCTATGCCTTCGGTCCGCTTTTCCTGTTCAAGGGCTACCGCGTC 
GAGGGTTGA