ViewGene
Locus Name:
GeneID:
Location:

GeneID:5123
TrivialName: PA14_69030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69030
PAO1 Ortholog Locus:PA5227
Sequence Length:315
Protein Length:104
Start: 6156185
Stop: 6156499
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08612.1|AE004935_9 (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGAGCCAGTCGAATACCCTCACCGTGCAGATTCTCGACAAGGAATACTGCATCAATTGCCCGGACGACGAG
CGCGCCAACCTGGAAAGCGCCGCCCGTTACCTGGACGGCAAGATGCGCGAGATCCGCTCCAGCGGCAAAGTC
ATCGGCGCCGACCGGGTTGCCGTGATGGCCGCCCTCAACATCACCCACGACCTGCTGCACCGCAAGGAGCGC
CTGGACCAGGAAAGCAGCTCGACCCGCGAGCGCGTGCGCGAACTGCTCGATCGCGTCGACCGCGCCCTGGCG
AATCCGGCCGATGCCGGCGAAGCCTGA
Translation:
MSQSNTLTVQILDKEYCINCPDDERANLESAARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLLHRKER
LDQESSSTRERVRELLDRVDRALANPADAGEA*
AnnotationID:5128GeneID:5123
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5227
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10246




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27390




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34823




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5123_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5123
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7531
                           PA5227_tr
                           translation of PA5227
                           104
                           99.99
                           99.99
                           0
                           519.0
     

     
     
193656
                           gb|AAG08612.1|AE004935_9
                           (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           519.0
     

     
     
193658
                           gb|AAN70767.1|AE016720_10
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           108
                           69.44
                           81.48
                           6
                           347.0
     

     
     
193657
                           gb|AAO58652.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           109
                           67.88
                           76.14
                           5
                           347.0
     

     






      

          
GC ORFID: 48125How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5227Glimmer Score: 

          
Start: 5419872Stop: 5420186

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5227 translation of PA5227Homolog Bit Score 204.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3852 (ORF: BLASTX 139.0), t_PA5227 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGTCGAATACCCTCACCGTGCAGATTCTCGACAAGGAATACTGCATCAATTGCCCGGACGACGAG 
CGCGCCAACCTGGAAAGCGCCGCCCGTTACCTGGACGGCAAGATGCGCGAGATCCGCTCCAGCGGCAAAGTC 
ATCGGCGCCGACCGGGTTGCCGTGATGGCCGCCCTCAACATCACCCACGACCTGCTGCACCGCAAGGAGCGC 
CTGGACCAGGAAAGCAGCTCGACCCGCGAGCGCGTGCGCGAACTGCTCGATCGCGTCGACCGCGCCCTGGCG 
AATCCGGCCGATGCCGGCGAAGCCTGA