ViewGene

Locus Name:
GeneID:
Location:

GeneID:5122
TrivialName: PA14_29710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29710
PAO1 Ortholog Locus:PA2659
Sequence Length:309
Protein Length:102
Start: 2573273
Stop: 2573581
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06047.1|AE004694_10 (AE004694) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 102/102 (100%), Positives = 102/102 (100%)
Sequence:
ATGAAGAAACTGACTGCCCTGTTCGCCGCCACCGCCATCGCCCTGACTGCCGGCCTGGCCCAGGCCCGCGAC
CTCGGCCCGGACGAGGCGCTGAAGCTGCGTGACGCCGGGACCATCAAGTCCTTCGAAGAGCTGAACAAGAAC
GCCATCGCCAAGCATCCCGGCTCGAGCGTCCACGATACCGAGCTGGAAGAGGAATACGGCCGCTACATCTAC
CAGGTCGAGTTGCGCGACCCGCAGGGCGTGAAGTGGGACCTGGAGCTGGATGCCGCTACCGGCGCCGTGCTC
AAGGACCACCAGGACGACTGA
Translation:
MKKLTALFAATAIALTAGLAQARDLGPDEALKLRDAGTIKSFEELNKNAIAKHPGSSVHDTELEEEYGRYIY
QVELRDPQGVKWDLELDAATGAVLKDHQDD*
AnnotationID:5127GeneID:5122
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 17:05:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2659
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10244
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27388
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36353
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5122_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5122

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7530 PA2659_tr translation of PA2659 102 99.99 99.99 0 519.0
193652 gb|AAG06047.1|AE004694_10 (AE004694) hypothetical protein PA2659 [Pseudomonas aeruginosa PAO1] 102 99.99 99.99 0 519.0
193653 gb|AAN67958.1|AE016428_6 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 102 59.80 77.45 0 315.0
193654 gb|AAO56861.1| (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 102 50.98 71.56 0 280.0
193655 gb|AAO55129.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 103 50.48 71.84 2 275.0
GC ORFID: 48124How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2659Glimmer Score:
Start: 2380653Stop: 2380345
Length: 309
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2659 translation of PA2659Homolog Bit Score 204.0
Other Homologs: psyr_15may02_Scaffold17_revised_gene2787 (ORF: BLASTX 114.0), psyr_15may02_Scaffold5_revised_gene6006 (ORF: BLASTX 105.0), t_PA2659 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAAACTGACTGCCCTGTTCGCCGCCACCGCCATCGCCCTGACTGCCGGCCTGGCCCAGGCCCGCGAC
CTCGGCCCGGACGAGGCGCTGAAGCTGCGTGACGCCGGGACCATCAAGTCCTTCGAAGAGCTGAACAAGAAC
GCCATCGCCAAGCATCCCGGCTCGAGCGTCCACGATACCGAGCTGGAAGAGGAATACGGCCGCTACATCTAC
CAGGTCGAGTTGCGCGACCCGCAGGGCGTGAAGTGGGACCTGGAGCTGGATGCCGCTACCGGCGCCGTGCTC
AAGGACCACCAGGACGACTGA