ViewGene
Locus Name:
GeneID:
Location:

GeneID:5121
TrivialName: PA14_52640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52640
PAO1 Ortholog Locus:PA0900
Sequence Length:291
Protein Length:96
Start: 4667346
Stop: 4667056
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04289.1|AE004524_6 (AE004524) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/96 (100%), Positives = 96/96 (100%)
Sequence:
ATGTCCGATAGCCTGCAACTGATCCTCGAAGATACCGACGGCACCCAGCTGGAAACTTCCTGCACCCGTTTC
GCCGTGGTCTGGCAGGGCAAGGAAGTGTGGGTCCAGCAAGCCGGCAACGGCCAGTTGCTGATCGGCGTCGAC
GTCGAAGACGGCGATACCGAATACACCAACCTGCTGCTGCGGCCGATGGCGACCAACCTGGTCAGCCTGCAA
CTGGAGATGGAGCCGATCGAAGAGGGCGACGACCACGAGCACGGCCCCGACTGCGGCTGCGACCACACCCAC
TGA
Translation:
MSDSLQLILEDTDGTQLETSCTRFAVVWQGKEVWVQQAGNGQLLIGVDVEDGDTEYTNLLLRPMATNLVSLQ
LEMEPIEEGDDHEHGPDCGCDHTH*
AnnotationID:5126GeneID:5121
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 12:12:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:PA0900
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10242




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27386




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32008




  
Author/Investigator(s):
        Itoh Y.





  
Title:
        Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.




  
PubMed:
        98053840


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(23):7280-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5121
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7529
                           PA0900_tr
                           translation of PA0900
                           96
                           99.99
                           99.99
                           0
                           518.0
     

     
     
193649
                           gb|AAG04289.1|AE004524_6
                           (AE004524) hypothetical protein PA0900 [Pseudomonas aeruginosa PAO1]
                           96
                           99.99
                           99.99
                           0
                           518.0
     

     
     
193650
                           gb|AAC46015.1|
                           (AF011922) hypothetical 10.6 kD protein [Pseudomonas aeruginosa]
                           96
                           99.99
                           99.99
                           0
                           518.0
     

     
     
193651
                           gb|AAN70051.1|AE016644_5
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           98
                           80.61
                           85.71
                           4
                           411.0
     

     






      

          
GC ORFID: 48123How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0900Glimmer Score: 

          
Start: 286561Stop: 286851

          
Length: 291


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0900 translation of PA0900Homolog Bit Score 204.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7821 (ORF: BLASTX 151.0), t_PA0900 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGATAGCCTGCAACTGATCCTCGAAGATACCGACGGCACCCAGCTGGAAACTTCCTGCACCCGTTTC 
GCCGTGGTCTGGCAGGGCAAGGAAGTGTGGGTCCAGCAAGCCGGCAACGGCCAGTTGCTGATCGGCGTCGAC 
GTCGAAGACGGCGATACCGAATACACCAACCTGCTGCTGCGGCCGATGGCGACCAACCTGGTCAGCCTGCAA 
CTGGAGATGGAGCCGATCGAAGAGGGCGACGACCACGAGCACGGCCCCGACTGCGGCTGCGACCACACCCAC 
TGA