ViewGene
Locus Name:
GeneID:
Location:

GeneID:5120
TrivialName: PA14_72470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72470
PAO1 Ortholog Locus:PA5491
Sequence Length:294
Protein Length:97
Start: 6455600
Stop: 6455307
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08876.1|AE004961_11 (AE004961) probable cytochrome [Pseudomonas aeruginosa PAO1]
Identities = 97/97 (100%), Positives = 97/97 (100%)
Sequence:
ATGAAGAAACTGCTGCTCGCAGCAACAGTCGTTGCGGTGGCCGTTACGGCGCAGGCGGCGCAGGACCCGGAA
GCAGTGTTCAACCGGACCTGTGGCGCGTGTCACGACGGCCAGCTGCCGATGGCGCCGAAAAAGGGCGACCAT
GCCGCCTGGGAGCCGCGGCTGGCCAAGGGCATGCCGACCCTGGTCCAGCATGTGACCAACGGATTCAACGCC
ATGCCGCCCCGCGGCCTGTGCACCGACTGCAGTGCCGAAGACTACCAGGCAACCATCCAGTGGATGGTGAAG
AAGTAG
Translation:
MKKLLLAATVVAVAVTAQAAQDPEAVFNRTCGACHDGQLPMAPKKGDHAAWEPRLAKGMPTLVQHVTNGFNA
MPPRGLCTDCSAEDYQATIQWMVKK*
AnnotationID:5125GeneID:5120
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c-type protein
Cell Localization:()
Synonyms:PA5491
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3245
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO13003.1| (AY171618) probable cytochrome C [Pseudomonas fluorescens]
          Length = 96

 Score =  152 bits (384), Expect = 4e-37
 Identities = 71/94 (75%), Positives = 76/94 (80%)

>gb|AAN68938.1|AE016525_5 (AE016786) cytochrome c-type protein [Pseudomonas putida KT2440]
          Length = 96

 Score =  143 bits (360), Expect = 2e-34
 Identities = 66/96 (68%), Positives = 75/96 (78%)

>gb|AAN53349.1|AE015474_12 (AE015474) cytochrome c [Shewanella oneidensis MR-1]
          Length = 99

 Score =  102 bits (254), Expect = 4e-22
 Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 1/97 (1%)






 
Structural Features:
COG3245, CycB, Cytochrome c5 [Energy production and conversion]
CD-Length = 126 residues,  80.2% aligned
Score =  108 bits (272), Expect = 8e-26
Identities = 51/101 (50%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
 






   
Genomic Context:






   
Comment:


















    ReferenceID:10240




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27384




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33243




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5120_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5120
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7528
                           PA5491_tr
                           translation of PA5491
                           97
                           99.99
                           99.99
                           0
                           521.0
     

     
     
193642
                           gb|AAG08876.1|AE004961_11
                           (AE004961) probable cytochrome [Pseudomonas aeruginosa PAO1]
                           97
                           99.99
                           99.99
                           0
                           521.0
     

     
     
193643
                           gb|AAO13003.1|
                           (AY171618) probable cytochrome C [Pseudomonas fluorescens]
                           97
                           73.19
                           79.38
                           1
                           383.0
     

     
     
193644
                           gb|AAN68938.1|AE016525_5
                           (AE016786) cytochrome c-type protein [Pseudomonas putida KT2440]
                           97
                           68.04
                           77.31
                           1
                           360.0
     

     
     
193645
                           gb|AAN65759.1|AE016202_2
                           (AE016774) cytochrome c-type protein [Pseudomonas putida KT2440]
                           100
                           62.00
                           71.00
                           3
                           340.0
     

     






      

          
GC ORFID: 48122How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5491Glimmer Score: 

          
Start: 5719289Stop: 5718996

          
Length: 294


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5491 translation of PA5491Homolog Bit Score 205.0

          
Other Homologs:  t_PA5491 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAAACTGCTGCTCGCAGCAACAGTCGTTGCGGTGGCCGTTACGGCGCAGGCGGCGCAGGACCCGGAA 
GCAGTGTTCAACCGGACCTGTGGCGCGTGTCACGACGGCCAGCTGCCGATGGCGCCGAAAAAGGGCGACCAT 
GCCGCCTGGGAGCCGCGGCTGGCCAAGGGCATGCCGACCCTGGTCCAGCATGTGACCAACGGATTCAACGCC 
ATGCCGCCCCGCGGCCTGTGCACCGACTGCAGTGCCGAAGACTACCAGGCAACCATCCAGTGGATGGTGAAG 
AAGTAG