ViewGene
Locus Name:
GeneID:
Location:

GeneID:512
TrivialName: PA14_34900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34900
PAO1 Ortholog Locus:PA2298
Sequence Length:1725
Protein Length:574
Start: 3106367
Stop: 3108091
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05686.1|AE004655_8 (AE004655) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 572/574 (99%), Positives = 572/574 (99%)
Sequence:
ATGAACACCCTGGAGCAGGAATACGACATCGTGGTGATTGGCGGCGGCACCGCCGGGCCGATGGCGGCGATC
AAGGCCAAGGAACACGACCGCGAACTGCGCGTGCTGCTGGTGGACAAGGCCAACGTCAAGCGCAGCGGCGCC
ATCAGCATGGGCATGGACGGGCTGAACAACGCCATCGTCCCCGGCCACGCCACGGCCGAGCAGTACACCCGG
GAAATCACCGTGGCCAACGACGGCATCGTCAACCAGGCGGCGGTCTACGCCTATGCCAGCCACAGCTTCGAG
ACCCTGCGGCAACTGGATCGCTGGGGCGTCAGGTTCGAAAAGGACGAGACCGGCGACTATGCGGTGAAGAAG
GTCCACCACATGGGCGCCTACGTGCTGCCGATGCCGGAAGGGCACGACATCAAGAAGGTGCTCTACCGCCAG
CTCAAGCGTGCGCGGATCCCCATCGCCAACCGCCTGGTCTGCACCCGCCTGCTCACCGATGCCGAGGGCGCG
GTGAACGGCGTACTCGGTTTCGACTGCCGCAGCGGCGACTTCCATGTGATCCGCGCCAAGGCGGTGATCCTT
TGCTGCGGCGCGGCGGGCCGCCTGGGCCTGCCGTCCTCGGGCTACCTGATGGGTACCTACGAGAACCCGACC
AACGCCGGCGACGGCTACGCCATGGCCTATCATGCCGGCGCCGAGCTGGCCAACCTGGAATGCTTCCAGATC
AACCCGCTGATCAAGGACTACAACGGCCCGGCCTGTGCCTACGTCACCGGCCCGCTGGGCGGCTATACCGCC
AACGCCAGGGGTGAACGCTTCATCGAATGCGACTACTGGAGCGGGCAGATGATGTGGGAGTTCCACCAGGAA
CTCGAAGGCGGCAACGGCCCGGTGTTCCTCAAGCTCGACCACCTGGCGGAGGAAACCATCCAGACCATCGAG
GACATCCTCCATGGCAACGAACGCCCCAGTCGCGGGCAGTTCCACGCCGGGCGCGGCACCGACTACCGCCAG
CAGATGGTCGAGATGCACATTTCCGAGATCGGCTTCTGCTCCGGCCACTCGGCCTCCGGCGTGTGGGTCAAC
GAGAAGGCCGAGACCAGCGTGAAGGGCCTCTACGCCGCCGGCGACATGGCCGCGGTGCCGCACAACTACATG
CTCGGCGCCTTCACCTATGGCTGGTTCGCCGGGCGCAACGCCGCCGAATACGTCGCCGGGCGCGCCTTCAGC
GCGGTCGACCGCGCCCAGGTCGAGCGCGAGCGTGCGCGGATCGAGGCGCCGCTGCTGCGCGAGCACGGCCTG
CCGGCGGCGCAGGTGGAGTACAAGCTGCGCCGGCTGGTCAACGACTACCTGCAACCGCCCAAGGTGACCCGC
AAGATGGAATTGGGCCTGCAACGCATCCAGGCCATCGCCGAGGACCTGGAGCGGATCAAGGCGGACAACCCC
CACGAGCTGATGCGCGCCCTGGAGGTCAGCGCGATCCGCGACTGCGCGGAGATGGCCGCGCGCGCCTCGCTG
TTCCGCACCGAGAGCCGCTGGGGCCTGTACCACCATCGGGTGGACTATCCGCGGCGCGACGACGAGGCCTGG
TTCTGCCACGCGCACCTGAAGAAGGACGAACAGGGGCGCATGGCCAGCTTCAGGAAACCGGTCGAACCCTAC
CTGTTCGCCATCGACGAGGGCGAACAGCAGGCCTACCAGCGCCTGCGGCTGAGGAACGACGCCGCCTAG
Translation:
MNTLEQEYDIVVIGGGTAGPMAAIKAKEHDRELRVLLVDKANVKRSGAISMGMDGLNNAIVPGHATAEQYTR
EITVANDGIVNQAAVYAYASHSFETLRQLDRWGVRFEKDETGDYAVKKVHHMGAYVLPMPEGHDIKKVLYRQ
LKRARIPIANRLVCTRLLTDAEGAVNGVLGFDCRSGDFHVIRAKAVILCCGAAGRLGLPSSGYLMGTYENPT
NAGDGYAMAYHAGAELANLECFQINPLIKDYNGPACAYVTGPLGGYTANARGERFIECDYWSGQMMWEFHQE
LEGGNGPVFLKLDHLAEETIQTIEDILHGNERPSRGQFHAGRGTDYRQQMVEMHISEIGFCSGHSASGVWVN
EKAETSVKGLYAAGDMAAVPHNYMLGAFTYGWFAGRNAAEYVAGRAFSAVDRAQVERERARIEAPLLREHGL
PAAQVEYKLRRLVNDYLQPPKVTRKMELGLQRIQAIAEDLERIKADNPHELMRALEVSAIRDCAEMAARASL
FRTESRWGLYHHRVDYPRRDDEAWFCHAHLKKDEQGRMASFRKPVEPYLFAIDEGEQQAYQRLRLRNDAA*
AnnotationID:521GeneID:512
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:09
Gene Name:
Confidence Code:3
GeneProduct:puccinate dehydrogenase
Cell Localization:()
Synonyms:PA2298
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative fumarate reductase
Functional Category Confidence Code:5
COGs:COG1053
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65838.1|AE016212_4 (AE016774) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 574

 Score = 1018 bits (2631), Expect = 0.0
 Identities = 487/574 (84%), Positives = 522/574 (90%)

>dbj|BAB54581.1| (AP003015) probable oxidoreductase [Mesorhizobium loti]
          Length = 578

 Score =  765 bits (1975), Expect = 0.0
 Identities = 368/570 (64%), Positives = 452/570 (79%), Gaps = 2/570 (0%)

>dbj|BAC72564.1| (AP005040) putative oxidoreductase [Streptomyces avermitilis
           MA-4680]
          Length = 939

 Score =  648 bits (1672), Expect = 0.0
 Identities = 328/559 (58%), Positives = 398/559 (71%), Gaps = 11/559 (1%)






 
Structural Features:
COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
[Energy production and conversion]
CD-Length = 562 residues,  98.8% aligned
Score =  380 bits (977), Expect = 3e-106
Identities = 177/580 (30%), Positives = 259/580 (44%), Gaps = 63/580 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1027




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18169




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32492




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:512_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:512
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
903
                           PA2298_tr
                           translation of PA2298
                           574
                           99.65
                           99.65
                           0
                           3024.0
     

     
     
36736
                           gb|AAG05686.1|AE004655_8
                           (AE004655) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           574
                           99.65
                           99.65
                           0
                           3024.0
     

     
     
36737
                           gb|AAN65838.1|AE016212_4
                           (AE016774) oxidoreductase, putative [Pseudomonas putida KT2440]
                           574
                           84.84
                           90.94
                           0
                           2631.0
     

     
     
36738
                           dbj|BAB54581.1|
                           (AP003015) probable oxidoreductase [Mesorhizobium loti]
                           580
                           63.44
                           77.93
                           8
                           1974.0
     

     
     
36739
                           dbj|BAC48461.1|
                           (AP005946) blr3196 [Bradyrhizobium japonicum USDA 110]
                           595
                           60.16
                           73.61
                           23
                           1901.0
     

     






      

          
GC ORFID: 43514How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2298Glimmer Score: 

          
Start: 1847549Stop: 1845825

          
Length: 1725


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2298 translation of PA2298Homolog Bit Score 1169.0

          
Other Homologs:  t_PA2298 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACACCCTGGAGCAGGAATACGACATCGTGGTGATTGGCGGCGGCACCGCCGGGCCGATGGCGGCGATC 
AAGGCCAAGGAACACGACCGCGAACTGCGCGTGCTGCTGGTGGACAAGGCCAACGTCAAGCGCAGCGGCGCC 
ATCAGCATGGGCATGGACGGGCTGAACAACGCCATCGTCCCCGGCCACGCCACGGCCGAGCAGTACACCCGG 
GAAATCACCGTGGCCAACGACGGCATCGTCAACCAGGCGGCGGTCTACGCCTATGCCAGCCACAGCTTCGAG 
ACCCTGCGGCAACTGGATCGCTGGGGCGTCAGGTTCGAAAAGGACGAGACCGGCGACTATGCGGTGAAGAAG 
GTCCACCACATGGGCGCCTACGTGCTGCCGATGCCGGAAGGGCACGACATCAAGAAGGTGCTCTACCGCCAG 
CTCAAGCGTGCGCGGATCCCCATCGCCAACCGCCTGGTCTGCACCCGCCTGCTCACCGATGCCGAGGGCGCG 
GTGAACGGCGTACTCGGTTTCGACTGCCGCAGCGGCGACTTCCATGTGATCCGCGCCAAGGCGGTGATCCTT 
TGCTGCGGCGCGGCGGGCCGCCTGGGCCTGCCGTCCTCGGGCTACCTGATGGGTACCTACGAGAACCCGACC 
AACGCCGGCGACGGCTACGCCATGGCCTATCATGCCGGCGCCGAGCTGGCCAACCTGGAATGCTTCCAGATC 
AACCCGCTGATCAAGGACTACAACGGCCCGGCCTGTGCCTACGTCACCGGCCCGCTGGGCGGCTATACCGCC 
AACGCCAGGGGTGAACGCTTCATCGAATGCGACTACTGGAGCGGGCAGATGATGTGGGAGTTCCACCAGGAA 
CTCGAAGGCGGCAACGGCCCGGTGTTCCTCAAGCTCGACCACCTGGCGGAGGAAACCATCCAGACCATCGAG 
GACATCCTCCATGGCAACGAACGCCCCAGTCGCGGGCAGTTCCACGCCGGGCGCGGCACCGACTACCGCCAG 
CAGATGGTCGAGATGCACATTTCCGAGATCGGCTTCTGCTCCGGCCACTCGGCCTCCGGCGTGTGGGTCAAC 
GAGAAGGCCGAGACCAGCGTGAAGGGCCTCTACGCCGCCGGCGACATGGCCGCGGTGCCGCACAACTACATG 
CTCGGCGCCTTCACCTATGGCTGGTTCGCCGGGCGCAACGCCGCCGAATACGTCGCCGGGCGCGCCTTCAGC 
GCGGTCGACCGCGCCCAGGTCGAGCGCGAGCGTGCGCGGATCGAGGCGCCGCTGCTGCGCGAGCACGGCCTG 
CCGGCGGCGCAGGTGGAGTACAAGCTGCGCCGGCTGGTCAACGACTACCTGCAACCGCCCAAGGTGACCCGC 
AAGATGGAATTGGGCCTGCAACGCATCCAGGCCATCGCCGAGGACCTGGAGCGGATCAAGGCGGACAACCCC 
CACGAGCTGATGCGCGCCCTGGAGGTCAGCGCGATCCGCGACTGCGCGGAGATGGCCGCGCGCGCCTCGCTG 
TTCCGCACCGAGAGCCGCTGGGGCCTGTACCACCATCGGGTGGACTATCCGCGGCGCGACGACGAGGCCTGG 
TTCTGCCACGCGCACCTGAAGAAGGACGAACAGGGGCGCATGGCCAGCTTCAGGAAACCGGTCGAACCCTAC 
CTGTTCGCCATCGACGAGGGCGAACAGCAGGCCTACCAGCGCCTGCGGCTGAGGAACGACGCCGCCTAG