ViewGene
Locus Name:
GeneID:
Location:

GeneID:5119
TrivialName: PA14_64370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64370
PAO1 Ortholog Locus:PA4867
Sequence Length:306
Protein Length:101
Start: 5735117
Stop: 5735422
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08252.1|AE004900_6 (AE004900) urease beta subunit [Pseudomonas aeruginosa PAO1]
Identities = 101/101 (100%), Positives = 101/101 (100%)
Sequence:
ATGATCCCCGGTGAATACGACATCCAGCCCGGCGATATCGAACTCAACGCCGGCCGCCGCACCCTCGCCCTG
AGCGTGGCGAACACCGGCGACCGGCCGATCCAGGTCGGCTCGCACTACCACTTCTTCGAGGTCAACGACGCC
CTCGCCTTCGACCGTCCGGCCACCCGTGGCATGCGCCTGAACATCGCCGCCGGCACCGCGGTGCGCTTCGAA
CCGGGGCAGAGCCGCGAGGTGGAGCTGGTGGAAATCGGCGGCGGACGGCGGGTATACGGCTTTGCCGGGCGG
GTGATGGGGGACCTCTAG
Translation:
MIPGEYDIQPGDIELNAGRRTLALSVANTGDRPIQVGSHYHFFEVNDALAFDRPATRGMRLNIAAGTAVRFE
PGQSREVELVEIGGGRRVYGFAGRVMGDL*
AnnotationID:5124GeneID:5119
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 06:06:36
Gene Name:ureB
Confidence Code:2
GeneProduct:urease beta subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00699
Secondary Functional Category(ies):
EC Number:3.5.1.5
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58323.1| (AE016873) urease, beta subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 102

 Score =  171 bits (433), Expect = 8e-43
 Identities = 83/101 (82%), Positives = 91/101 (90%)

>emb|CAD15735.1| (AL646067) PROBABLE UREASE (BETA SUBUNIT) PROTEIN [Ralstonia
           solanacearum]
          Length = 101

 Score =  157 bits (396), Expect = 1e-38
 Identities = 78/101 (77%), Positives = 84/101 (83%)

>gb|AAL86690.1|AF417006_2 (AF417006) urea amidohydrolase beta subunit [Nitrosococcus oceani]
          Length = 101

 Score =  156 bits (394), Expect = 3e-38
 Identities = 77/101 (76%), Positives = 83/101 (82%)






 
Structural Features:
pfam00699, Urease_beta, Urease beta subunit.
CD-Length = 102 residues,  98.0% aligned
Score =  154 bits (392), Expect = 1e-39
Identities = 68/100 (68%), Positives = 74/100 (74%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10238




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27382




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35193




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5119_cdd.html


    		




 
URL:

















    ReferenceID:35955




  
Author/Investigator(s):
        Maeda M, Hidaka M, Nakamura A, Masaki H, Uozumi T.





  
Title:
        Cloning, sequencing, and expression of thermophilic Bacillus sp. strain TB-90 urease gene complex in Escherichia coli.




  
PubMed:
        8288539


MedLine:
        




    
Source:
J Bacteriol. 1994 Jan;176(2):432-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8288539

















    ReferenceID:35959




  
Author/Investigator(s):
        Jones BD, Mobley HL.





  
Title:
        Proteus mirabilis urease: nucleotide sequence determination and comparison with jack bean urease.




  
PubMed:
        2687233


MedLine:
        




    
Source:
J Bacteriol. 1989 Dec;171(12):6414-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2687233

















    ReferenceID:35963




  
Author/Investigator(s):
        Mulrooney SB, Hausinger RP.





  
Title:
        Sequence of the Klebsiella aerogenes urease genes and evidence for accessory proteins facilitating nickel incorporation.




  
PubMed:
        2211515


MedLine:
        




    
Source:
J Bacteriol. 1990 Oct;172(10):5837-43.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2211515

















    ReferenceID:35968




  
Author/Investigator(s):
        Zhu J, Teng CH, Chang CF, Chang CD, Simpson KW, Wei C, McDonough P, McDonough S, Chang YF.





  
Title:
        Cloning and characterization of a Helicobacter bizzozeronii urease gene cluster.




  
PubMed:
        12652903


MedLine:
        




    
Source:
DNA Seq. 2002 Dec;13(6):321-31.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12652903









           
Homologs By Global Alignment 

           

       



     
Gene ID:5119
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7527
                           PA4867_tr
                           translation of PA4867
                           101
                           99.99
                           99.99
                           0
                           522.0
     

     
     
193466
                           gb|AAG08252.1|AE004900_6
                           (AE004900) urease beta subunit [Pseudomonas aeruginosa PAO1]
                           101
                           99.99
                           99.99
                           0
                           522.0
     

     
     
193467
                           gb|AAO58323.1|
                           (AE016873) urease, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           102
                           81.37
                           89.21
                           1
                           433.0
     

     
     
193468
                           emb|CAD15735.1|
                           (AL646067) PROBABLE UREASE (BETA SUBUNIT) PROTEIN [Ralstonia solanacearum]
                           101
                           77.22
                           83.16
                           0
                           396.0
     

     
     
193469
                           gb|AAL86690.1|AF417006_2
                           (AF417006) urea amidohydrolase beta subunit [Nitrosococcus oceani]
                           101
                           76.23
                           82.17
                           0
                           394.0
     

     






      

          
GC ORFID: 48121How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4867Glimmer Score: 

          
Start: 4998798Stop: 4999103

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4867 translation of PA4867Homolog Bit Score 205.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5806 (ORF: BLASTX 176.0), t_PA4867 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCCCGGTGAATACGACATCCAGCCCGGCGATATCGAACTCAACGCCGGCCGCCGCACCCTCGCCCTG 
AGCGTGGCGAACACCGGCGACCGGCCGATCCAGGTCGGCTCGCACTACCACTTCTTCGAGGTCAACGACGCC 
CTCGCCTTCGACCGTCCGGCCACCCGTGGCATGCGCCTGAACATCGCCGCCGGCACCGCGGTGCGCTTCGAA 
CCGGGGCAGAGCCGCGAGGTGGAGCTGGTGGAAATCGGCGGCGGACGGCGGGTATACGGCTTTGCCGGGCGG 
GTGATGGGGGACCTCTAG