ViewGene

Locus Name:
GeneID:
Location:

GeneID:5118
TrivialName: PA14_63300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63300
PAO1 Ortholog Locus:PA4789
Sequence Length:306
Protein Length:101
Start: 5649525
Stop: 5649830
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08175.1|AE004892_6 (AE004892) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/101 (100%), Positives = 101/101 (100%)
Sequence:
ATGGACCTGCACGAACTCACCGCGCGCCTGCACGCCATCCGCGACCGCAACGACTGGCGCCAATTCCACAGC
CCGAAGAACCTGGCCATGGCCGCCAGCGTCGAGATGGCCGAACTGGTGGAGATCTTCCAGTGGCTGACGGAA
GACCAGTCGCGCACGCTGTCGGCCGAGCAGCTCGAACACGCTGGCCAGGAAGTTGGCGACATCGTCCTTTAT
CTGCTGCTGTTCTGCGGGGAAACCGGCCTCGACCTGGAACAGGTAGTGCGCGCCAAGCTGGCCGACTGCGAA
CGGCGCTTCCTGCCATGA
Translation:
MDLHELTARLHAIRDRNDWRQFHSPKNLAMAASVEMAELVEIFQWLTEDQSRTLSAEQLEHAGQEVGDIVLY
LLLFCGETGLDLEQVVRAKLADCERRFLP*
AnnotationID:5123GeneID:5118
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 08:08:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4789
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1694
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1694, MazG, Predicted pyrophosphatase 
CD-Length = 102 residues,  96.1% aligned
Score = 55.0 bits (132), Expect = 2e-09
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Genomic Context:
Comment:
ReferenceID:10236
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27380
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37679
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5118_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5118

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7526 PA4789_tr translation of PA4789 101 99.99 99.99 0 521.0
193463 gb|AAG08175.1|AE004892_6 (AE004892) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 101 99.99 99.99 0 521.0
193464 gb|AAO54283.1| (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 101 80.19 86.13 0 414.0
193465 gb|AAN66206.1|AE016248_9 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 132 59.09 65.90 31 405.0
GC ORFID: 48120How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4789Glimmer Score:
Start: 4913205Stop: 4913510
Length: 306
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4789 translation of PA4789Homolog Bit Score 205.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3614 (ORF: BLASTX 164.0), t_PA4789 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCTGCACGAACTCACCGCGCGCCTGCACGCCATCCGCGACCGCAACGACTGGCGCCAATTCCACAGC
CCGAAGAACCTGGCCATGGCCGCCAGCGTCGAGATGGCCGAACTGGTGGAGATCTTCCAGTGGCTGACGGAA
GACCAGTCGCGCACGCTGTCGGCCGAGCAGCTCGAACACGCTGGCCAGGAAGTTGGCGACATCGTCCTTTAT
CTGCTGCTGTTCTGCGGGGAAACCGGCCTCGACCTGGAACAGGTAGTGCGCGCCAAGCTGGCCGACTGCGAA
CGGCGCTTCCTGCCATGA