ViewGene
Locus Name:
GeneID:
Location:

GeneID:5116
TrivialName: PA14_20880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20880
PAO1 Ortholog Locus:PA3338
Sequence Length:291
Protein Length:96
Start: 1799776
Stop: 1800066
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06726.1|AE004756_4 (AE004756) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/96 (100%), Positives = 96/96 (100%)
Sequence:
ATGCCCACCGCCAAGCCCGAAATCGTCATCACCTATTGCACCCAGTGCCAGTGGCTACTGCGTGCCGCCTGG
CTGGCCCAGGAACTGCTCAGCACCTTCGCCGACGATCTCGGAAAAGTCTGCCTGGAGCCCGGAACCGGTGGC
GTCTTCCGTATCACCTGCGACGGCGTGCAGGTCTGGGAGCGCAAGGCCGACGGCGGCTTCCCCGAGGCCAAG
GCGCTCAAGCAGCGGGTTCGCGACCGCATCGACCCGCAACGCGACCTCGGGCACAACGATCGTCCTTCCCGC
TGA
Translation:
MPTAKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAK
ALKQRVRDRIDPQRDLGHNDRPSR*
AnnotationID:5121GeneID:5116
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 10:10:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3338
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10232




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27376




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32227




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5116_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5116
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7524
                           PA3338_tr
                           translation of PA3338
                           96
                           99.99
                           99.99
                           0
                           522.0
     

     
     
193394
                           gb|AAG06726.1|AE004756_4
                           (AE004756) hypothetical protein PA3338 [Pseudomonas aeruginosa PAO1]
                           96
                           99.99
                           99.99
                           0
                           522.0
     

     
     
193395
                           gb|AAN70087.1|AE016648_5
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           96
                           85.41
                           91.66
                           3
                           459.0
     

     
     
193396
                           gb|AAO55318.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           100
                           80.00
                           87.00
                           4
                           440.0
     

     
     
193400
                           emb|CAE42384.1|
                           (BX640417) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           100
                           66.00
                           73.00
                           4
                           346.0
     

     






      

          
GC ORFID: 48118How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3338Glimmer Score: 

          
Start: 3154156Stop: 3153866

          
Length: 291


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3338 translation of PA3338Homolog Bit Score 205.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7774 (ORF: BLASTX 178.0), t_PA3338 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCACCGCCAAGCCCGAAATCGTCATCACCTATTGCACCCAGTGCCAGTGGCTACTGCGTGCCGCCTGG 
CTGGCCCAGGAACTGCTCAGCACCTTCGCCGACGATCTCGGAAAAGTCTGCCTGGAGCCCGGAACCGGTGGC 
GTCTTCCGTATCACCTGCGACGGCGTGCAGGTCTGGGAGCGCAAGGCCGACGGCGGCTTCCCCGAGGCCAAG 
GCGCTCAAGCAGCGGGTTCGCGACCGCATCGACCCGCAACGCGACCTCGGGCACAACGATCGTCCTTCCCGC 
TGA