ViewGene
Locus Name:
GeneID:
Location:

GeneID:5115
TrivialName: PA14_21770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21770
PAO1 Ortholog Locus:PA3265
Sequence Length:315
Protein Length:104
Start: 1894085
Stop: 1893771
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06653.1|AE004749_2 (AE004749) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGTCCTGGATCATCCTGTTTTTCGCCGGCCTGTTCGAAGTGGGCTGGGCCGTTGGTCTGAAATACACCGAA
GGCTTCAGCAAGCCGCTTCCCACGGTCCTCACGGCGCTCGCCATGCTGGTCAGCCTGGGCCTGCTCGGCCTG
GCCATGAAGCACCTGCCGCTGGGCACCGCCTATGCCGTCTGGACCGGGGTCGGCGCGGTCGGCACGGTAATC
GCCGGGATCGTCCTGTTCGGCGAATCCATGGCATTGCTGCGCCTGGCCAGCGTCGCGCTGATCGTCTGCGGA
CTGGTCGGCCTCAAGCTGAGCCATTAG
Translation:
MSWIILFFAGLFEVGWAVGLKYTEGFSKPLPTVLTALAMLVSLGLLGLAMKHLPLGTAYAVWTGVGAVGTVI
AGIVLFGESMALLRLASVALIVCGLVGLKLSH*
AnnotationID:5120GeneID:5115
AnnotatorUID: diggins
Modification Date/Time: 2005-09-12 22:10:40
Gene Name:
Confidence Code:3
GeneProduct:putative DMT superfamily transport protein
Cell Localization:(4) Inner membrane protein
Synonyms:sugE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative drug efflux protein
Functional Category Confidence Code:5
COGs:pfam00893,COG2076
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67322.1|AE016358_6 (AE016780) sugE protein [Pseudomonas putida KT2440]
          Length = 105

 Score =  184 bits (468), Expect = 7e-47
 Identities = 90/103 (87%), Positives = 99/103 (96%)

>dbj|BAB51425.1| (AP003005) molecular chaperone, SugES homolog [Mesorhizobium loti]
          Length = 104

 Score =  148 bits (373), Expect = 7e-36
 Identities = 68/103 (66%), Positives = 85/103 (82%)

>gb|AAN83658.1|AE016771_169 (AE016771) SugE protein [Escherichia coli CFT073]
          Length = 155

 Score =  142 bits (358), Expect = 4e-34
 Identities = 72/103 (69%), Positives = 82/103 (79%)








 
Structural Features:
pfam00893, Multi_Drug_Res, Small Multidrug Resistance protein.
CD-Length = 93 residues, 100.0% aligned
Score = 77.9 bits (192), Expect = 1e-16
Identities = 44/93 (47%), Positives = 64/93 (68%)

COG2076, EmrE, Membrane transporters of cations and cationic drugs 
[Inorganic ion transport and metabolism]
CD-Length = 106 residues,  97.2% aligned
Score = 90.1 bits (224), Expect = 3e-20
Identities = 51/103 (49%), Positives = 75/103 (72%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10230




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27374




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32278




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5115_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5115
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7522
                           PA3265_tr
                           translation of PA3265
                           104
                           99.99
                           99.99
                           0
                           521.0
     

     
     
193347
                           gb|AAG06653.1|AE004749_2
                           (AE004749) probable transporter [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           521.0
     

     
     
193348
                           gb|AAN67322.1|AE016358_6
                           (AE016780) sugE protein [Pseudomonas putida KT2440]
                           105
                           85.71
                           94.28
                           1
                           466.0
     

     
     
193356
                           emb|CAA49571.1|
                           (X69949) SugES [Escherichia coli]
                           105
                           68.57
                           79.04
                           1
                           354.0
     

     
     
193361
                           gb|AAC46453.1|
                           (U21726) SugE [Escherichia coli]
                           105
                           68.57
                           79.04
                           1
                           354.0
     

     






      

          
GC ORFID: 48117How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3265Glimmer Score: 

          
Start: 3059846Stop: 3060160

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3265 translation of PA3265Homolog Bit Score 205.0

          
Other Homologs:  t_PA1882 (ORF: BLASTX 115.0), t_PA3265 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTGGATCATCCTGTTTTTCGCCGGCCTGTTCGAAGTGGGCTGGGCCGTTGGTCTGAAATACACCGAA 
GGCTTCAGCAAGCCGCTTCCCACGGTCCTCACGGCGCTCGCCATGCTGGTCAGCCTGGGCCTGCTCGGCCTG 
GCCATGAAGCACCTGCCGCTGGGCACCGCCTATGCCGTCTGGACCGGGGTCGGCGCGGTCGGCACGGTAATC 
GCCGGGATCGTCCTGTTCGGCGAATCCATGGCATTGCTGCGCCTGGCCAGCGTCGCGCTGATCGTCTGCGGA 
CTGGTCGGCCTCAAGCTGAGCCATTAG