ViewGene
Locus Name:
GeneID:
Location:

GeneID:5114
TrivialName: PA14_30380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30380
PAO1 Ortholog Locus:PA2607
Sequence Length:306
Protein Length:101
Start: 2632578
Stop: 2632273
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05995.1|AE004689_7 (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/101 (100%), Positives = 101/101 (100%)
Sequence:
ATGGCCACGACCCTCCACGTACTGTCCCGCTCGCCGTTCAATGACGGCCGCCTGGGCAGTTGCCTGTACCTG
CTCAACCCCGGCGACGGCCTGCTGCTCTGCGGCGACGCCGTGCACGCCTTGCTGGCCGGCAGCCACGCCTGC
CAGGCCCTGGAACTGATGCCGGCGGAAATCGAACTGTTCGCCCTGCTGGAAGACCTCCAGGCGCGCGGTATC
GAGGACGTCCCCGCTCGCCTGGTGGCGGTGGACTACCCCGGCTTCGTCGAACTCGCCACCCGCTTCGACAAG
GTCAACAGTTGGCTATGA
Translation:
MATTLHVLSRSPFNDGRLGSCLYLLNPGDGLLLCGDAVHALLAGSHACQALELMPAEIELFALLEDLQARGI
EDVPARLVAVDYPGFVELATRFDKVNSWL*
AnnotationID:5119GeneID:5114
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:24
Gene Name:
Confidence Code:3
GeneProduct:putative DsrH family protein
Cell Localization:()
Synonyms:PA2607
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative sufphur oxidase
Functional Category Confidence Code:5
COGs:pfam04077
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56818.1| (AE016868) DsrH family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 99

 Score =  105 bits (261), Expect = 7e-23
 Identities = 53/98 (54%), Positives = 71/98 (72%), Gaps = 1/98 (1%)








 
Structural Features:
pfam04077, DsrH, DsrH like protein. DsrH is involved in oxidation of intracellular 
sulphur in the phototrophic sulphur bacterium Chromatium vinosum D
CD-Length = 88 residues, 100.0% aligned
Score = 98.8 bits (246), Expect = 9e-23
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 4/91 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10228




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27372




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33160




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5114_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5114
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7521
                           PA2607_tr
                           translation of PA2607
                           101
                           99.99
                           99.99
                           0
                           522.0
     

     
     
193345
                           gb|AAG05995.1|AE004689_7
                           (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           101
                           99.99
                           99.99
                           0
                           522.0
     

     
     
193346
                           gb|AAO56818.1|
                           (AE016868) DsrH family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           101
                           52.47
                           70.29
                           2
                           262.0
     

     






      

          
GC ORFID: 48116How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2607Glimmer Score: 

          
Start: 2321348Stop: 2321653

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2607 translation of PA2607Homolog Bit Score 205.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2744 (ORF: BLASTX 105.0)

          
GC ORF Sequence

           
ATGGCCACGACCCTCCACGTACTGTCCCGCTCGCCGTTCAATGACGGCCGCCTGGGCAGTTGCCTGTACCTG 
CTCAACCCCGGCGACGGCCTGCTGCTCTGCGGCGACGCCGTGCACGCCTTGCTGGCCGGCAGCCACGCCTGC 
CAGGCCCTGGAACTGATGCCGGCGGAAATCGAACTGTTCGCCCTGCTGGAAGACCTCCAGGCGCGCGGTATC 
GAGGACGTCCCCGCTCGCCTGGTGGCGGTGGACTACCCCGGCTTCGTCGAACTCGCCACCCGCTTCGACAAG 
GTCAACAGTTGGCTATGA