ViewGene

Locus Name:
GeneID:
Location:

GeneID:5113
TrivialName: PA14_39570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39570
PAO1 Ortholog Locus:PA1929
Sequence Length:297
Protein Length:98
Start: 3522478
Stop: 3522774
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05317.1|AE004619_4 (AE004619) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 97/98 (98%), Positives = 98/98 (100%)
Sequence:
ATGGCAACCGATCTCTACGCGCTGGCCGAACAGGTCGAGGACGAAGCGGGCTACCTGCGCTTCCTCGCCGCG
CTGGCGGCGGACTGGGAGGAAGACCGCCGCCTCGCCGCCGCCAACCCGCCGAAGCCGTTCGGCCCCAGCCCG
CTGGGTTGGGAGAACGGCAGCATCGGTGGCTTCCTCGATGCCGCCGCGACCTGGGGCGAGGACTCCCGCGAC
GGCCTGCCGGGCTATTCCAGGCCGGAGAATGCCTGGCGGCGCGCGGCGCAACTGATGCTGGCGGGCAAGTTC
TATGAATGA
Translation:
MATDLYALAEQVEDEAGYLRFLAALAADWEEDRRLAAANPPKPFGPSPLGWENGSIGGFLDAAATWGEDSRD
GLPGYSRPENAWRRAAQLMLAGKFYE*
AnnotationID:5118GeneID:5113
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1929
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10226
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27370
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5113

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7520 PA1929_tr translation of PA1929 98 98.97 99.99 0 521.0
193344 gb|AAG05317.1|AE004619_4 (AE004619) hypothetical protein PA1929 [Pseudomonas aeruginosa PAO1] 98 98.97 99.99 0 521.0
GC ORFID: 48115How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1929Glimmer Score:
Start: 1431433Stop: 1431137
Length: 297
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1929 translation of PA1929Homolog Bit Score 205.0
Other Homologs: t_PA1929 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAACCGATCTCTACGCGCTGGCCGAACAGGTCGAGGACGAAGCGGGCTACCTGCGCTTCCTCGCCGCG
CTGGCGGCGGACTGGGAGGAAGACCGCCGCCTCGCCGCCGCCAACCCGCCGAAGCCGTTCGGCCCCAGCCCG
CTGGGTTGGGAGAACGGCAGCATCGGTGGCTTCCTCGATGCCGCCGCGACCTGGGGCGAGGACTCCCGCGAC
GGCCTGCCGGGCTATTCCAGGCCGGAGAATGCCTGGCGGCGCGCGGCGCAACTGATGCTGGCGGGCAAGTTC
TATGAATGA