ViewGene
Locus Name:
GeneID:
Location:

GeneID:511
TrivialName: PA14_64080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64080
PAO1 Ortholog Locus:PA4845
Sequence Length:1776
Protein Length:591
Start: 5710570
Stop: 5712345
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08230.1|AE004898_1 (AE004898) thiol:disulfide interchange protein DipZ [Pseudomonas aeruginosa PAO1]
Identities = 586/591 (99%), Positives = 587/591 (99%)
Sequence:
ATGCGCCGCCTGCTGACCCTGATCCTCCTGCTGGTCGCCCTGCCCGCCGGCGCGGGCCTGTTCGACAGCCGT
CCCGGCGCCTCCCTCGGCGGCGGCCTCGATGGCGGCGACTTCCTCAAGGTCGACCAGGCGTTCAAGCCCAGC
GTCGAGCGCAGCGACGCGCAGCACGTGCTGCTGCGCTTCGTCAACGCCGAGGGCTACTACCTTTACCGCCAC
CGCTTCCAGTTCAAGGTCGAGCCAGCCCAGGTCAGCCTCGGCCAGGTGCAGCTGCCGGCGGGCAAGCAGCAC
CACGACGAGTACTTCGGCGATACCGAGGTCTACTACAACATCGTCGACCTGGAGATTCCCCTGAACAACCCG
GCCCGGCAGCCCTATACCCTGGTGGTGACCTACCAGGGCTGCGCCGACAAGGGCCTCTGCTACCCCCCGGAA
ACCAGGCGCTTCGACATCGACGGCGGTGCCGCGACGCCAGCCACGAACGACGCGGCCAGCAAGGACCCGCTC
GAACACAAGGGCAAGCGCAGCCTGCTGTTCTTCTTCCTCGCCGGCCTGACCCTGACCTTCACCCCCTGCGTG
CTGCCGATGCTGCCGATCCTCTCCGGAGTGGTCCTGCGCGGCCGGCCGGGCGGTGGTCGCGGCTTCGTCCTG
TCGCTCGCCTACGTGCTGCCGATGGCGCTCTGCTTCGCCCTGCTCGGCGCGCTGATGGGCATGTTCGGCGCC
AGCCTCAATCTCCAGGCGCAATTGCAGTCGCCCTGGGTACTGGTGCCATTCGCGGCGTTCTTCGCGCTGTTC
GCCGTGGCCATGTTCGGCTTCTTCGAGCTACGCCTGCCCGGCTTCATCCGCGAACCGCTCGACCGCCTGGCC
GGCGATGCGCGCGGCGGCTCGATCCTCGGCGCGGCCACCCTCGGCGTGCTTTCCAGCCTGCTGGTCTCGCCC
TGCGTCTCCGCCCCGCTGGCCGCCTCGCTGCTCTATATCAGCGCCAGCGGCGATGCCTGGGGGGGCGGCCTG
CAACTGTTCGCCCTCGGCCTGGGCATGGGTACGCCGCTGGTGGTCTTCGGCGCCGGCGGCGGCGCCCTGCTG
CCCAAGAGCGGAGCCTGGATGAACGGCGTGCGCAACGCCTTCGGCGTGCTGTTGCTGGCGGTCGCCGTGTGG
CTGCTGGAGCGGGTGGTGTCCGGCCCGGTGGCGCTGATGCTCTGGGGCATGCTCGCCGGCGGCGCCGGCCTG
GCCCTGGGCGCCCTCGAATTCACCCCGAAGAGCGCCGCACGCCGCCTGCTGCAACTGCTTGGCCTGATGTTC
CTGACCTACGCGGTGGCCGCCTGGATCGGCGCCCTGCAGGGCGAGTCGGACCCGATCCATCCGCTGGGCCGC
TCGGTGCCGTCGATCCACGCCGGGCCACCGAGCACGCCCGGCGAATGGCAGAACCTGACCACCCCGGCGCAG
CTGGACGCCGCCCTGGCCGAGGCACGCCAGGCCGGCAAGCCGGTGCTGCTGGACTGGTATGCGGACTGGTGC
ATCAGTTGCAAGGTCATCGAGCGCCAGGTCCTCACCGATCCCACGGTGCAGGCACGACTGCCGGCCTACCGC
CTGCTGCGCTTCGACATCACCGAAAGCAACCCGGCCCAGCGCGGCCTGCTGGACCGCTACAACCTGTTCGGT
CCGCCGGCGATCCTGTTCTTCGCCCCGGGCGGTGACGAATGGAGCGACTTGCGCGTCATCGGAGAGATCGAC
GCCGCCGGGCTCGCCGAACGACTGCGCCGGGCCGCTACCCGGCAGTGA
Translation:
MRRLLTLILLLVALPAGAGLFDSRPGASLGGGLDGGDFLKVDQAFKPSVERSDAQHVLLRFVNAEGYYLYRH
RFQFKVEPAQVSLGQVQLPAGKQHHDEYFGDTEVYYNIVDLEIPLNNPARQPYTLVVTYQGCADKGLCYPPE
TRRFDIDGGAATPATNDAASKDPLEHKGKRSLLFFFLAGLTLTFTPCVLPMLPILSGVVLRGRPGGGRGFVL
SLAYVLPMALCFALLGALMGMFGASLNLQAQLQSPWVLVPFAAFFALFAVAMFGFFELRLPGFIREPLDRLA
GDARGGSILGAATLGVLSSLLVSPCVSAPLAASLLYISASGDAWGGGLQLFALGLGMGTPLVVFGAGGGALL
PKSGAWMNGVRNAFGVLLLAVAVWLLERVVSGPVALMLWGMLAGGAGLALGALEFTPKSAARRLLQLLGLMF
LTYAVAAWIGALQGESDPIHPLGRSVPSIHAGPPSTPGEWQNLTTPAQLDAALAEARQAGKPVLLDWYADWC
ISCKVIERQVLTDPTVQARLPAYRLLRFDITESNPAQRGLLDRYNLFGPPAILFFAPGGDEWSDLRVIGEID
AAGLAERLRRAATRQ*
AnnotationID:520GeneID:511
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 06:06:31
Gene Name:dipZ
Confidence Code:1
GeneProduct:thiol:disulfide interchange protein
Cell Localization:()
Synonyms:dsbD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4232
Secondary Functional Category(ies):translation, post-translational modification, degradation
EC Number:1.8.1.8
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58287.1| (AE016873) thiol:disulfide interchange protein DsbD [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 604

 Score =  721 bits (1862), Expect = 0.0
 Identities = 374/593 (63%), Positives = 446/593 (75%), Gaps = 9/593 (1%)

>gb|AAN66188.1|AE016246_5 (AE016776) thiol:disulfide interchange protein DsbD [Pseudomonas
           putida KT2440]
          Length = 590

 Score =  696 bits (1796), Expect = 0.0
 Identities = 367/593 (61%), Positives = 438/593 (73%), Gaps = 17/593 (2%)








 
Structural Features:
COG4232, COG4232, Thiol:disulfide interchange protein 
[Posttranslational modification, protein turnover, chaperones / 
Energy production and conversion]
CD-Length = 569 residues,  99.8% aligned
Score =  534 bits (1377), Expect = 1e-152
Identities = 279/598 (46%), Positives = 346/598 (57%), Gaps = 39/598 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1025




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35203




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:511_cdd.html


    		




 
URL:

















    ReferenceID:35982




  
Author/Investigator(s):
        Page MD, Saunders NF, Ferguson SJ.





  
Title:
        Disruption of the Pseudomonas aeruginosa dipZ gene, encoding a putative protein-disulfide reductase, leads to partial pleiotropic deficiency in c-type cytochrome biogenesis.




  
PubMed:
        9353916


MedLine:
        




    
Source:
Microbiology. 1997 Oct;143 ( Pt 10):3111-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9353916









           
Homologs By Global Alignment 

           

       



     
Gene ID:511
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
901
                           PA4845_tr
                           translation of PA4845
                           591
                           99.15
                           99.32
                           0
                           3030.0
     

     
     
36726
                           gb|AAG08230.1|AE004898_1
                           (AE004898) thiol:disulfide interchange protein DipZ [Pseudomonas aeruginosa PAO1]
                           591
                           99.15
                           99.32
                           0
                           3030.0
     

     
     
36727
                           gb|AAB84084.1|
                           (AF010322) protein-disulfide reductase [Pseudomonas aeruginosa]
                           592
                           93.41
                           94.08
                           11
                           2724.0
     

     
     
36728
                           gb|AAO58287.1|
                           (AE016873) thiol:disulfide interchange protein DsbD [Pseudomonas syringae pv. tomato str. DC3000]
                           607
                           61.61
                           73.64
                           19
                           1873.0
     

     
     
36729
                           gb|AAN66188.1|AE016246_5
                           (AE016776) thiol:disulfide interchange protein DsbD [Pseudomonas putida KT2440]
                           600
                           61.33
                           73.33
                           19
                           1812.0
     

     






      

          
GC ORFID: 43513How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4845Glimmer Score: 

          
Start: 4974250Stop: 4976025

          
Length: 1776


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4845 translation of PA4845Homolog Bit Score 1171.0

          
Other Homologs:  t_PA2478 (ORF: BLASTX 417.0), t_PA4845 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCCTGCTGACCCTGATCCTCCTGCTGGTCGCCCTGCCCGCCGGCGCGGGCCTGTTCGACAGCCGT 
CCCGGCGCCTCCCTCGGCGGCGGCCTCGATGGCGGCGACTTCCTCAAGGTCGACCAGGCGTTCAAGCCCAGC 
GTCGAGCGCAGCGACGCGCAGCACGTGCTGCTGCGCTTCGTCAACGCCGAGGGCTACTACCTTTACCGCCAC 
CGCTTCCAGTTCAAGGTCGAGCCAGCCCAGGTCAGCCTCGGCCAGGTGCAGCTGCCGGCGGGCAAGCAGCAC 
CACGACGAGTACTTCGGCGATACCGAGGTCTACTACAACATCGTCGACCTGGAGATTCCCCTGAACAACCCG 
GCCCGGCAGCCCTATACCCTGGTGGTGACCTACCAGGGCTGCGCCGACAAGGGCCTCTGCTACCCCCCGGAA 
ACCAGGCGCTTCGACATCGACGGCGGTGCCGCGACGCCAGCCACGAACGACGCGGCCAGCAAGGACCCGCTC 
GAACACAAGGGCAAGCGCAGCCTGCTGTTCTTCTTCCTCGCCGGCCTGACCCTGACCTTCACCCCCTGCGTG 
CTGCCGATGCTGCCGATCCTCTCCGGAGTGGTCCTGCGCGGCCGGCCGGGCGGTGGTCGCGGCTTCGTCCTG 
TCGCTCGCCTACGTGCTGCCGATGGCGCTCTGCTTCGCCCTGCTCGGCGCGCTGATGGGCATGTTCGGCGCC 
AGCCTCAATCTCCAGGCGCAATTGCAGTCGCCCTGGGTACTGGTGCCATTCGCGGCGTTCTTCGCGCTGTTC 
GCCGTGGCCATGTTCGGCTTCTTCGAGCTACGCCTGCCCGGCTTCATCCGCGAACCGCTCGACCGCCTGGCC 
GGCGATGCGCGCGGCGGCTCGATCCTCGGCGCGGCCACCCTCGGCGTGCTTTCCAGCCTGCTGGTCTCGCCC 
TGCGTCTCCGCCCCGCTGGCCGCCTCGCTGCTCTATATCAGCGCCAGCGGCGATGCCTGGGGGGGCGGCCTG 
CAACTGTTCGCCCTCGGCCTGGGCATGGGTACGCCGCTGGTGGTCTTCGGCGCCGGCGGCGGCGCCCTGCTG 
CCCAAGAGCGGAGCCTGGATGAACGGCGTGCGCAACGCCTTCGGCGTGCTGTTGCTGGCGGTCGCCGTGTGG 
CTGCTGGAGCGGGTGGTGTCCGGCCCGGTGGCGCTGATGCTCTGGGGCATGCTCGCCGGCGGCGCCGGCCTG 
GCCCTGGGCGCCCTCGAATTCACCCCGAAGAGCGCCGCACGCCGCCTGCTGCAACTGCTTGGCCTGATGTTC 
CTGACCTACGCGGTGGCCGCCTGGATCGGCGCCCTGCAGGGCGAGTCGGACCCGATCCATCCGCTGGGCCGC 
TCGGTGCCGTCGATCCACGCCGGGCCACCGAGCACGCCCGGCGAATGGCAGAACCTGACCACCCCGGCGCAG 
CTGGACGCCGCCCTGGCCGAGGCACGCCAGGCCGGCAAGCCGGTGCTGCTGGACTGGTATGCGGACTGGTGC 
ATCAGTTGCAAGGTCATCGAGCGCCAGGTCCTCACCGATCCCACGGTGCAGGCACGACTGCCGGCCTACCGC 
CTGCTGCGCTTCGACATCACCGAAAGCAACCCGGCCCAGCGCGGCCTGCTGGACCGCTACAACCTGTTCGGT 
CCGCCGGCGATCCTGTTCTTCGCCCCGGGCGGTGACGAATGGAGCGACTTGCGCGTCATCGGAGAGATCGAC 
GCCGCCGGGCTCGCCGAACGACTGCGCCGGGCCGCTACCCGGCAGTGA