ViewGene
Locus Name:
GeneID:
Location:

GeneID:5109
TrivialName: PA14_00160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00160
PAO1 Ortholog Locus:PA0015
Sequence Length:318
Protein Length:105
Start: 17240
Stop: 16923
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03405.1|AE004441_6 (AE004441) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 102/105 (97%), Positives = 102/105 (97%)
Sequence:
ATGATGATCGAAGGTCTGGAAAAGATGCTGGCCAAAGGCGTGGACAATGCGCTGCTGCGCTTCGGCCTGGGC
AAGGGCTACCTGGACGCGGGCGACGCCGAACGCGCGACGGAACACCTCCAGCGTTGCGTAGAGCAGGACCCG
ACGTATTCCGCTGGCTGGAAACTGCTGGGCAAGGCGCGCCAGGCTGCCGGCGATCTCGCGGGCGCCCGGCAG
GCCTGGGAGCAAGGCCTGGCAGCTGCCGCGACGCATGGCGACAAGCAGGCCGAAAAGGAAATGACGGTGTTC
CTGCGCAAGCTCGATAGGGCGAGAACCTGA
Translation:
MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQ
AWEQGLAAAATHGDKQAEKEMTVFLRKLDRART*
AnnotationID:5114GeneID:5109
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 11:11:26
Gene Name:
Confidence Code:3
GeneProduct:putative tetratricopeptide repeat domain
Cell Localization:()
Synonyms:PA0015
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00189
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65698.1|AE016196_9 (AE016774) TPR domain protein [Pseudomonas putida KT2440]
          Length = 104

 Score =  148 bits (373), Expect = 7e-36
 Identities = 72/101 (71%), Positives = 80/101 (79%)








 
Structural Features:
cd00189, TPR, Tetratricopeptide repeat domain
CD-Length = 100 residues,  77.0% aligned
Score = 40.1 bits (93), Expect = 6e-05
Identities = 24/77 (31%), Positives = 34/77 (44%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10218




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27362




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33371




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5109_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5109
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7516
                           PA0015_tr
                           translation of PA0015
                           105
                           97.14
                           97.14
                           0
                           524.0
     

     
     
193296
                           gb|AAG03405.1|AE004441_6
                           (AE004441) hypothetical protein PA0015 [Pseudomonas aeruginosa PAO1]
                           105
                           97.14
                           97.14
                           0
                           524.0
     

     
     
193297
                           gb|AAN65698.1|AE016196_9
                           (AE016774) TPR domain protein [Pseudomonas putida KT2440]
                           105
                           68.57
                           76.19
                           1
                           372.0
     

     
     
193299
                           emb|CAE38207.1|
                           (BX640431) conserved hypothetical protein [Bordetella parapertussis]
                           107
                           54.20
                           63.55
                           2
                           280.0
     

     
     
193298
                           emb|CAE33376.1|
                           (BX640445) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           111
                           52.25
                           61.26
                           6
                           280.0
     

     






      

          
GC ORFID: 48111How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0015Glimmer Score: 

          
Start: 5818577Stop: 5818260

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0015 translation of PA0015Homolog Bit Score 206.0

          
Other Homologs:  t_PA0015 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGATCGAAGGTCTGGAAAAGATGCTGGCCAAAGGCGTGGACAATGCGCTGCTGCGCTTCGGCCTGGGC 
AAGGGCTACCTGGACGCGGGCGACGCCGAACGCGCGACGGAACACCTCCAGCGTTGCGTAGAGCAGGACCCG 
ACGTATTCCGCTGGCTGGAAACTGCTGGGCAAGGCGCGCCAGGCTGCCGGCGATCTCGCGGGCGCCCGGCAG 
GCCTGGGAGCAAGGCCTGGCAGCTGCCGCGACGCATGGCGACAAGCAGGCCGAAAAGGAAATGACGGTGTTC 
CTGCGCAAGCTCGATAGGGCGAGAACCTGA