ViewGene
Locus Name:
GeneID:
Location:

GeneID:5108
TrivialName: PA14_56620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56620
PAO1 Ortholog Locus:PA4354
Sequence Length:303
Protein Length:100
Start: 5045603
Stop: 5045905
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07742.1|AE004851_10 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 100/100 (100%), Positives = 100/100 (100%)
Sequence:
ATGCCACTGGACATCGACGAAATCATCAAGGCTCTCTCCCACCCGGTGCGACGCGACATGCTGCGCTGGCTG
AAGGAACCGGAGAAGTACTTCGTCGAGCAGGACCACCCGTTCGAGATCGGCGTCTGCGCCGGCAAGTTCGAC
CAGCGTACCGGTCTCTCCCAGTCCACCGTATCGGTACACCTCGCCACCCTGCAACGCGCCGGTCTGGTGACC
AGCCGCCGGGTCGGCCAGTGGAACTTCTTCAAGCGCAACGAGGAGACCATCCAGGCCTTCCTCGACCAACTC
GGCGACGAGCTGTAA
Translation:
MPLDIDEIIKALSHPVRRDMLRWLKEPEKYFVEQDHPFEIGVCAGKFDQRTGLSQSTVSVHLATLQRAGLVT
SRRVGQWNFFKRNEETIQAFLDQLGDEL*
AnnotationID:5113GeneID:5108
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 05:05:11
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4354
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00418,COG0640
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66546.1|AE016283_5 (AE016777) Transcriptional regulator, ArsR family [Pseudomonas
           putida KT2440]
          Length = 100

 Score =  145 bits (367), Expect = 3e-35
 Identities = 69/100 (69%), Positives = 84/100 (84%)

>gb|AAO57806.1| (AE016871) transcriptional regulator, ArsR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 104

 Score =  143 bits (361), Expect = 2e-34
 Identities = 66/100 (66%), Positives = 83/100 (83%)

>emb|CAC46144.1| (AL591787) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN
          [Sinorhizobium meliloti]
          Length = 96

 Score =  135 bits (340), Expect = 5e-32
 Identities = 64/96 (66%), Positives = 80/96 (83%), Gaps = 1/96 (1%)






 
Structural Features:
smart00418, HTH_ARSR, helix_turn_helix, 
Arsenical Resistance Operon Repressor
CD-Length = 79 residues,  97.5% aligned
Score = 69.1 bits (169), Expect = 1e-13
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

COG0640, ArsR, Predicted transcriptional regulators [Transcription]
CD-Length = 110 residues,  80.0% aligned
Score = 62.5 bits (150), Expect = 2e-11






   
Genomic Context:






   
Comment:


















    ReferenceID:10216




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17105




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5108_cdd.html


    		




 
URL:

















    ReferenceID:27360




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5108
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7515
                           PA4354_tr
                           translation of PA4354
                           100
                           99.99
                           99.99
                           0
                           523.0
     

     
     
193283
                           gb|AAG07742.1|AE004851_10
                           (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           100
                           99.99
                           99.99
                           0
                           523.0
     

     
     
193284
                           gb|AAN66546.1|AE016283_5
                           (AE016777) Transcriptional regulator, ArsR family [Pseudomonas putida KT2440]
                           100
                           69.00
                           84.00
                           0
                           367.0
     

     
     
193286
                           emb|CAC46144.1|
                           (AL591787) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
                           100
                           64.00
                           80.00
                           4
                           339.0
     

     
     
193287
                           dbj|BAB49397.1|
                           (AP002999) hypothetical protein [Mesorhizobium loti]
                           100
                           64.00
                           76.00
                           2
                           323.0
     

     






      

          
GC ORFID: 48110How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4354Glimmer Score: 

          
Start: 4309279Stop: 4309581

          
Length: 303


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4354 translation of PA4354Homolog Bit Score 206.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1972 (ORF: BLASTX 144.0), t_PA4354 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCACTGGACATCGACGAAATCATCAAGGCTCTCTCCCACCCGGTGCGACGCGACATGCTGCGCTGGCTG 
AAGGAACCGGAGAAGTACTTCGTCGAGCAGGACCACCCGTTCGAGATCGGCGTCTGCGCCGGCAAGTTCGAC 
CAGCGTACCGGTCTCTCCCAGTCCACCGTATCGGTACACCTCGCCACCCTGCAACGCGCCGGTCTGGTGACC 
AGCCGCCGGGTCGGCCAGTGGAACTTCTTCAAGCGCAACGAGGAGACCATCCAGGCCTTCCTCGACCAACTC 
GGCGACGAGCTGTAA