ViewGene
Locus Name:
GeneID:
Location:

GeneID:5107
TrivialName: PA14_20730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20730
PAO1 Ortholog Locus:PA3351
Sequence Length:324
Protein Length:107
Start: 1784431
Stop: 1784108
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06739.1|AE004757_8 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 106/107 (99%), Positives = 106/107 (99%)
Sequence:
ATGGTCATCGACTTCAACCGGCTGAATCCCGGCAGCACGCCAGCCACCACCGGCCGTACCGGCAGCACCGCC
GCGGGGCGTCCCGACGCCACTGGCGCCGACAAGGCAGGCCCGGCCGCGACTTCCGCTCCGAAGAGCGGCGAG
TCGGTGCAGATCAGCGAAACCGCCCAGAACATGCAGAAAGTCACGGACCAGCTGCAGACCCTGCCGGTGGTC
GACAACGATAAGGTTGCCCGGATCAAGCAAGCGATCGCCGATGGCACTTATCAGGTCGACAGCGAGCGTGTT
GCCAGCAAGCTGCTCGACTTCGAATCCCAGCGCTGA
Translation:
MVIDFNRLNPGSTPATTGRTGSTAAGRPDATGADKAGPAATSAPKSGESVQISETAQNMQKVTDQLQTLPVV
DNDKVARIKQAIADGTYQVDSERVASKLLDFESQR*
AnnotationID:5112GeneID:5107
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 13:01:57
Gene Name:flgM
Confidence Code:3
GeneProduct:putative negative regulator of flagellin synthesis, FlgM
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:Anti-sigma-28 factor
Functional Category Confidence Code:5
COGs:pfam04316,COG2747
Secondary Functional Category(ies):motility and attachment
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69973.1|AE016635_9 (AE016790) negative regulator of flagellin synthesis FlgM
           [Pseudomonas putida KT2440]
          Length = 104

 Score =  103 bits (258), Expect = 1e-22
 Identities = 58/107 (54%), Positives = 79/107 (73%), Gaps = 3/107 (2%)








 
Structural Features:
pfam04316, FlgM, Anti-sigma-28 factor, FlgM.
CD-Length = 85 residues,  88.2% aligned
Score = 61.5 bits (149), Expect = 1e-11
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

COG2747, FlgM, Negative regulator of flagellin synthesis 
(anti-sigma28 factor) 
[Transcription / Cell motility and secretion / 
Intracellular trafficking and secretion]
CD-Length = 93 residues, 100.0% aligned
Score = 66.1 bits (161), Expect = 5e-13
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10214




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27358




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32203




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5107_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5107
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7514
                           PA3351_tr
                           translation of PA3351
                           107
                           99.06
                           99.06
                           0
                           524.0
     

     
     
193279
                           gb|AAG06739.1|AE004757_8
                           (AE004757) hypothetical protein PA3351 [Pseudomonas aeruginosa PAO1]
                           107
                           99.06
                           99.06
                           0
                           524.0
     

     
     
193280
                           gb|AAK31636.1|
                           (AY029221) FlgM [Pseudomonas aeruginosa]
                           107
                           99.06
                           99.06
                           0
                           524.0
     

     
     
193281
                           gb|AAN69973.1|AE016635_9
                           (AE016790) negative regulator of flagellin synthesis FlgM [Pseudomonas putida KT2440]
                           108
                           53.70
                           75.92
                           5
                           264.0
     

     
     
193282
                           gb|AAO55443.1|
                           (AE016862) negative regulator of flagellin synthesis FlgM, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           108
                           53.70
                           67.59
                           5
                           260.0
     

     






      

          
GC ORFID: 48109How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3351Glimmer Score: 

          
Start: 3169501Stop: 3169824

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3351 translation of PA3351Homolog Bit Score 206.0

          
Other Homologs:  t_PA3351 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCATCGACTTCAACCGGCTGAATCCCGGCAGCACGCCAGCCACCACCGGCCGTACCGGCAGCACCGCC 
GCGGGGCGTCCCGACGCCACTGGCGCCGACAAGGCAGGCCCGGCCGCGACTTCCGCTCCGAAGAGCGGCGAG 
TCGGTGCAGATCAGCGAAACCGCCCAGAACATGCAGAAAGTCACGGACCAGCTGCAGACCCTGCCGGTGGTC 
GACAACGATAAGGTTGCCCGGATCAAGCAAGCGATCGCCGATGGCACTTATCAGGTCGACAGCGAGCGTGTT 
GCCAGCAAGCTGCTCGACTTCGAATCCCAGCGCTGA