ViewGene
Locus Name:
GeneID:
Location:

GeneID:5106
TrivialName: PA14_24740
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 01:01:50
LocusName:PA14_24740
PAO1 Ortholog Locus:PA3042
Sequence Length:324
Protein Length:107
Start: 2164818
Stop: 2164495
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06430.1|AE004729_4 (AE004729) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/107 (98%), Positives = 106/107 (99%)
Sequence:
ATGAGCCAACTACCGGTGAACGCGACCGGCCTGTCGCGTCGCGAATTGCGCAAGGCGGTGATCCGCCTGCGC
CTGGAAATGCAGCGCCAGCAATTGCGCCGCGAAAGCCAACTGCTGGTGCAACCCTTCCGCCAGGCCCAGGGG
CTGGGCCACAACCTCAGCCAGCAACTGTTCGGCGGTGGCAATGCGGCGCTCTGGGGCGCCGGCGGAGCCGCA
CTGCTGGGCGTACTGCTTGGCAAGGGCGGACGCTGGCAGCGTCTGCTGCGCCTGGGCGTCGCCCTGGCCCCG
CTGTTGCTCGGCCTGCGCACGCGGAAAGGCCGTTGA
Translation:
MSQLPVNATGLSRRELRKAVIRLRLEMQRQQLRRESQLLVQPFRQAQGLGHNLSQQLFGGGNAALWGAGGAA
LLGVLLGKGGRWQRLLRLGVALAPLLLGLRTRKGR*
AnnotationID:5111GeneID:5106
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3042
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10212




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27356




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5106
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7513
                           PA3042_tr
                           translation of PA3042
                           107
                           98.13
                           99.06
                           0
                           523.0
     

     
     
193278
                           gb|AAG06430.1|AE004729_4
                           (AE004729) hypothetical protein PA3042 [Pseudomonas aeruginosa PAO1]
                           107
                           98.13
                           99.06
                           0
                           523.0
     

     






      

          
GC ORFID: 48108How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3042Glimmer Score: 

          
Start: 2789110Stop: 2789433

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3042 translation of PA3042Homolog Bit Score 206.0

          
Other Homologs:  t_PA3042 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAACTACCGGTGAACGCGACCGGCCTGTCGCGTCGCGAATTGCGCAAGGCGGTGATCCGCCTGCGC 
CTGGAAATGCAGCGCCAGCAATTGCGCCGCGAAAGCCAACTGCTGGTGCAACCCTTCCGCCAGGCCCAGGGG 
CTGGGCCACAACCTCAGCCAGCAACTGTTCGGCGGTGGCAATGCGGCGCTCTGGGGCGCCGGCGGAGCCGCA 
CTGCTGGGCGTACTGCTTGGCAAGGGCGGACGCTGGCAGCGTCTGCTGCGCCTGGGCGTCGCCCTGGCCCCG 
CTGTTGCTCGGCCTGCGCACGCGGAAAGGCCGTTGA