ViewGene
Locus Name:
GeneID:
Location:

GeneID:5105
TrivialName: PA14_29750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29750
PAO1 Ortholog Locus:PA2655
Sequence Length:309
Protein Length:102
Start: 2575991
Stop: 2576299
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06043.1|AE004694_6 (AE004694) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/102 (99%), Positives = 101/102 (99%)
Sequence:
ATGAAACGGCGGACGGGTACGGGCCGCTGGCGCTGGGCGCTGATGCTGCCGGTGCTGGTGTTCCTGTTGGGC
GAGTCCAGTGGACAGCGAGAGGAGGGGCGGTCGCCGCGGTTACCCGCGCAGGCTCGCTACGAGCAGGCCGTG
GAAAACGCGTTGCGCAGCGAGCGCGGCGAGCCGCGACAGGCCGGGACAGCGGCAGCGAAGGTGGCCGAGGCG
GGAGCCCCGGCGCGTCTGCGTGGCTGGCTGCGCTCGCTGGCCCGCCTGGCGATCTGGGGGACCTACGGCCCC
CCGGCGCTATTCAGGCCGTGA
Translation:
MKRRTGTGRWRWALMLPVLVFLLGESSGQREEGRSPRLPAQARYEQAVENALRSERGEPRQAGTAAAKVAEA
GAPARLRGWLRSLARLAIWGTYGPPALFRP*
AnnotationID:5110GeneID:5105
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 17:05:34
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2655
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10210




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27354




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5105
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7512
                           PA2655_tr
                           translation of PA2655
                           102
                           99.01
                           99.01
                           0
                           524.0
     

     
     
193277
                           gb|AAG06043.1|AE004694_6
                           (AE004694) hypothetical protein PA2655 [Pseudomonas aeruginosa PAO1]
                           102
                           99.01
                           99.01
                           0
                           524.0
     

     






      

          
GC ORFID: 48107How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2655Glimmer Score: 

          
Start: 2377935Stop: 2377627

          
Length: 309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2655 translation of PA2655Homolog Bit Score 206.0

          
Other Homologs:  t_PA2655 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGGCGGACGGGTACGGGCCGCTGGCGCTGGGCGCTGATGCTGCCGGTGCTGGTGTTCCTGTTGGGC 
GAGTCCAGTGGACAGCGAGAGGAGGGGCGGTCGCCGCGGTTACCCGCGCAGGCTCGCTACGAGCAGGCCGTG 
GAAAACGCGTTGCGCAGCGAGCGCGGCGAGCCGCGACAGGCCGGGACAGCGGCAGCGAAGGTGGCCGAGGCG 
GGAGCCCCGGCGCGTCTGCGTGGCTGGCTGCGCTCGCTGGCCCGCCTGGCGATCTGGGGGACCTACGGCCCC 
CCGGCGCTATTCAGGCCGTGA