ViewGene
Locus Name:
GeneID:
Location:

GeneID:5104
TrivialName: PA14_40860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40860
PAO1 Ortholog Locus:PA1830
Sequence Length:315
Protein Length:104
Start: 3645255
Stop: 3645569
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05219.1|AE004609_6 (AE004609) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGACCACCGTTGCTGACATCGTCTCCACCATGAAAAGCAAGTTCAACGCCAGCGCGGCCGCCGGCCTGGAT
CTGGTGTTCCAGTTCAACATCGAAGACGGCGACAACCACTACCTGGTCGTCAAGGACGGTACCTGCGAAGTG
GTACAGGGCGACGCCGAGAACCCCAACGTCACCCTGATCATGGACAGCGAAACCCTGAAGGGCATCACCAGC
GGCGAGACCGACGGCATGCAGGCCTTCATGGCCGGCAAGCTGCGCGCCGAAGGCGACATGATGCTGGCGATG
AAGCTGGGCGAACTGTTCCCGGTCTGA
Translation:
MTTVADIVSTMKSKFNASAAAGLDLVFQFNIEDGDNHYLVVKDGTCEVVQGDAENPNVTLIMDSETLKGITS
GETDGMQAFMAGKLRAEGDMMLAMKLGELFPV*
AnnotationID:5109GeneID:5104
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 05:05:48
Gene Name:
Confidence Code:3
GeneProduct:putative sterol carrier protein
Cell Localization:()
Synonyms:PA1830
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3255
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56226.1| (AE016865) SCP-2 sterol transfer family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 105

 Score =  154 bits (389), Expect = 1e-37
 Identities = 77/105 (73%), Positives = 89/105 (84%), Gaps = 1/105 (0%)







 
Structural Features:
COG3255, COG3255, Putative sterol carrier protein [Lipid metabolism]
CD-Length = 134 residues,  76.1% aligned
Score = 74.3 bits (182), Expect = 3e-15
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 4/105 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10208




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27352




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37097




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5104_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5104
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7511
                           PA1830_tr
                           translation of PA1830
                           104
                           99.99
                           99.99
                           0
                           525.0
     

     
     
193274
                           gb|AAG05219.1|AE004609_6
                           (AE004609) hypothetical protein PA1830 [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           525.0
     

     
     
193275
                           gb|AAO56226.1|
                           (AE016865) SCP-2 sterol transfer family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           105
                           73.33
                           84.76
                           1
                           391.0
     

     
     
193276
                           gb|AAN69518.1|AE016585_10
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           105
                           70.47
                           80.95
                           1
                           374.0
     

     






      

          
GC ORFID: 48106How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1830Glimmer Score: 

          
Start: 1308655Stop: 1308341

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1830 translation of PA1830Homolog Bit Score 206.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene115 (ORF: BLASTX 156.0), t_PA1830 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCGTTGCTGACATCGTCTCCACCATGAAAAGCAAGTTCAACGCCAGCGCGGCCGCCGGCCTGGAT 
CTGGTGTTCCAGTTCAACATCGAAGACGGCGACAACCACTACCTGGTCGTCAAGGACGGTACCTGCGAAGTG 
GTACAGGGCGACGCCGAGAACCCCAACGTCACCCTGATCATGGACAGCGAAACCCTGAAGGGCATCACCAGC 
GGCGAGACCGACGGCATGCAGGCCTTCATGGCCGGCAAGCTGCGCGCCGAAGGCGACATGATGCTGGCGATG 
AAGCTGGGCGAACTGTTCCCGGTCTGA