ViewGene
Locus Name:
GeneID:
Location:

GeneID:5103
TrivialName: PA14_49310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49310
PAO1 Ortholog Locus:PA1168
Sequence Length:321
Protein Length:106
Start: 4381730
Stop: 4381410
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04557.1|AE004547_3 (AE004547) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/106 (99%), Positives = 105/106 (99%)
Sequence:
ATGAAAAATCAGGTGAAAGCCCTGGCGGTTCTAAGTGTGGGTGAAATCGAACAAGTTTCTGGCGCCGGGACT
TTCCTGGGCGATGCCATCATCAATGGCGTCTACGCGGCCAACTCCTTCCTGAACTCGCCGCTGTTCTCCAGC
ATCGGCAACGCGGCCAGCGCCATCGGCCTCAACCGTACCCACGAGCTGGTCGACCTGCTGGCCTTCCAGGTG
CCTTCGGTGGCGGCGATCACCGTCGGCAAGATTCTCGGCGGGACCGACAACCACAATGTTCCGTTGCATTAC
AACAAGGAAAGCGGCGAAGGGCTTTACAGCTGA
Translation:
MKNQVKALAVLSVGEIEQVSGAGTFLGDAIINGVYAANSFLNSPLFSSIGNAASAIGLNRTHELVDLLAFQV
PSVAAITVGKILGGTDNHNVPLHYNKESGEGLYS*
AnnotationID:5108GeneID:5103
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 16:04:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
No putative conserved domains detected.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10206




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27350




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5103
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7510
                           PA1168_tr
                           translation of PA1168
                           106
                           99.05
                           99.05
                           0
                           523.0
     

     
     
193273
                           gb|AAG04557.1|AE004547_3
                           (AE004547) hypothetical protein PA1168 [Pseudomonas aeruginosa PAO1]
                           106
                           99.05
                           99.05
                           0
                           523.0
     

     






      

          
GC ORFID: 48105How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1168Glimmer Score: 

          
Start: 572178Stop: 572498

          
Length: 321


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1168 translation of PA1168Homolog Bit Score 206.0

          
Other Homologs:  t_PA1168 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAATCAGGTGAAAGCCCTGGCGGTTCTAAGTGTGGGTGAAATCGAACAAGTTTCTGGCGCCGGGACT 
TTCCTGGGCGATGCCATCATCAATGGCGTCTACGCGGCCAACTCCTTCCTGAACTCGCCGCTGTTCTCCAGC 
ATCGGCAACGCGGCCAGCGCCATCGGCCTCAACCGTACCCACGAGCTGGTCGACCTGCTGGCCTTCCAGGTG 
CCTTCGGTGGCGGCGATCACCGTCGGCAAGATTCTCGGCGGGACCGACAACCACAATGTTCCGTTGCATTAC 
AACAAGGAAAGCGGCGAAGGGCTTTACAGCTGA