ViewGene
Locus Name:
GeneID:
Location:

GeneID:5102
TrivialName: PA14_50160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50160
PAO1 Ortholog Locus:PA1100
Sequence Length:330
Protein Length:109
Start: 4457878
Stop: 4457549
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04489.1|AE004540_9 (AE004540) flagellar hook-basal body complex protein FliE [Pseudomonas aeruginosa PAO1]
Identities = 108/109 (99%), Positives = 108/109 (99%)
Sequence:
ATGAGTCAGGGTGTCGAGTTCAATCGTCTGATGCTGGAAATGCGTTCCATGCAAATGGAAGCCATGGCCAAG
GCCAAACCGGTTCAGGCGCCGGCCGAAGCGGGGGCGCCGAGCTTTTCGGAAATGCTCTCCCAGGCCGTGGAC
AAGGTGAACGAGACCCAGCAGGCCTCCACCGCGATGGCCAACGCCTTCGAGGTCGGCCAGAGCGGCGTCGAC
CTGACCGACGTGATGATCGCCAGCCAGAAGGCCAGCGTGTCGTTCCAGGCCATGACCCAGGTGCGCAACAAA
CTGGTCCAGGCCTACCAAGACATCATGCAGATGCCGGTCTGA
Translation:
MSQGVEFNRLMLEMRSMQMEAMAKAKPVQAPAEAGAPSFSEMLSQAVDKVNETQQASTAMANAFEVGQSGVD
LTDVMIASQKASVSFQAMTQVRNKLVQAYQDIMQMPV*
AnnotationID:5107GeneID:5102
AnnotatorUID: danlee
Modification Date/Time: 2004-05-31 14:02:31
Gene Name:fliE
Confidence Code:2
GeneProduct:flagellar hook-basal body complex protein FliE
Cell Localization:()
Synonyms:PA1100
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02049, COG1677
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
pfam02049, FliE, Flagellar hook-basal body complex protein FliE. Score: 85.8, 7e-19
COG1677, FliE, Flagellar hook-basal body protein. Score: 76.1, 6e-16







   
Genomic Context:
fliEFG (P. aeruginosa) 






   
Comment:


















    ReferenceID:10204




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27348




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32400




  
Author/Investigator(s):
        Arora SK, Ritchings BW, Almira EC, Lory S, Ramphal R.





  
Title:
        Cloning and characterization of Pseudomonas aeruginosa fliF, necessary for flagellar assembly and bacterial adherence to mucin.





  
PubMed:
        96239027


MedLine:
        




    
Source:
Infect Immun. 1996 Jun;64(6):2130-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:32401




  
Author/Investigator(s):
        Muller V, Jones CJ, Kawagishi I, Aizawa S, Macnab RM.





  
Title:
        Characterization of the fliE genes of Escherichia coli and Salmonella typhimurium and identification of the FliE protein as a component of the flagellar hook-basal body complex.





  
PubMed:
        92202159 


MedLine:
        




    
Source:
J Bacteriol. 1992 Apr;174(7):2298-304.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5102
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7509
                           PA1100_tr
                           translation of PA1100
                           109
                           99.08
                           99.08
                           0
                           523.0
     

     
     
193268
                           gb|AAG04489.1|AE004540_9
                           (AE004540) flagellar hook-basal body complex protein FliE [Pseudomonas aeruginosa PAO1]
                           109
                           99.08
                           99.08
                           0
                           523.0
     

     
     
193269
                           gb|AAB06800.1|
                           (L43507) flagellar basal body component [Pseudomonas aeruginosa]
                           109
                           99.08
                           99.08
                           0
                           523.0
     

     
     
193272
                           gb|AAN69948.1|AE016633_6
                           (AE016790) flagellar hook-basal body complex protein FliE [Pseudomonas putida KT2440]
                           110
                           75.45
                           86.36
                           1
                           397.0
     

     
     
193271
                           gb|AAG47967.1|AF312695_7
                           (AF312695) FliE [Pseudomonas fluorescens]
                           109
                           73.39
                           88.99
                           0
                           412.0
     

     






      

          
GC ORFID: 48104How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1100Glimmer Score: 

          
Start: 496030Stop: 496359

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1100 translation of PA1100Homolog Bit Score 206.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7917 (ORF: BLASTX 168.0), t_PA1100 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCAGGGTGTCGAGTTCAATCGTCTGATGCTGGAAATGCGTTCCATGCAAATGGAAGCCATGGCCAAG 
GCCAAACCGGTTCAGGCGCCGGCCGAAGCGGGGGCGCCGAGCTTTTCGGAAATGCTCTCCCAGGCCGTGGAC 
AAGGTGAACGAGACCCAGCAGGCCTCCACCGCGATGGCCAACGCCTTCGAGGTCGGCCAGAGCGGCGTCGAC 
CTGACCGACGTGATGATCGCCAGCCAGAAGGCCAGCGTGTCGTTCCAGGCCATGACCCAGGTGCGCAACAAA 
CTGGTCCAGGCCTACCAAGACATCATGCAGATGCCGGTCTGA