ViewGene
Locus Name:
GeneID:
Location:

GeneID:5101
TrivialName: PA14_51590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51590
PAO1 Ortholog Locus:
Sequence Length:318
Protein Length:105
Start: 4586242
Stop: 4586559
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82953.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 105/105 (100%), Positives = 105/105 (100%)
Sequence:
ATGCTTATTAAAATTCTTCGAATTATATTCTTGTTGCCTATAGTTGGTTTGGCACAGCAGGCTGCTGCCTCC
CCGCCCGCAGAGTCACACTCGGAACAATCTGAATCTTCGTGTATCGATGTCCAAGTCAATGGAGCACGTAGC
CTGTCTTATAACTGCATGGCTCAGCAAATGACTCCACCCAAAGAGGATCCTCGGCGTCGGAACCCTACCTTG
AACTCCACATTAGCGTCTGAACGCGCCACTCGCCTGCCACCCACACAGACAGGACTTTTTACCAGCCTTCAT
CAACGTGCCATATCGAACTCGAAAGACTAG
Translation:
MLIKILRIIFLLPIVGLAQQAAASPPAESHSEQSESSCIDVQVNGARSLSYNCMAQQMTPPKEDPRRRNPTL
NSTLASERATRLPPTQTGLFTSLHQRAISNSKD*
AnnotationID:5106GeneID:5101
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:13
Gene Name:RS08
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10202




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27346




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32076




  
Author/Investigator(s):
        He J, Baldini RL, Deziel E, Saucier M, Zhang Q, Liberati NT, Lee D, Urbach J, Goodman HM, Rahme LG.





  
Title:
        The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes.




  
PubMed:
        14983043


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2530-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5101
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
193267
                           gb|AAP82953.1|
                           (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
                           105
                           99.99
                           99.99
                           0
                           528.0
     

     






      

          
GC ORFID: 48103How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS08Glimmer Score: 

          
Start: 367665Stop: 367348

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RS08 105 Homolog: PA0673 / Hypothetical protein / P. aeruginosa / PAO1 (AAG04062) translation of RS08Homolog Bit Score 207.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTTATTAAAATTCTTCGAATTATATTCTTGTTGCCTATAGTTGGTTTGGCACAGCAGGCTGCTGCCTCC 
CCGCCCGCAGAGTCACACTCGGAACAATCTGAATCTTCGTGTATCGATGTCCAAGTCAATGGAGCACGTAGC 
CTGTCTTATAACTGCATGGCTCAGCAAATGACTCCACCCAAAGAGGATCCTCGGCGTCGGAACCCTACCTTG 
AACTCCACATTAGCGTCTGAACGCGCCACTCGCCTGCCACCCACACAGACAGGACTTTTTACCAGCCTTCAT 
CAACGTGCCATATCGAACTCGAAAGACTAG