ViewGene
Locus Name:
GeneID:
Location:

GeneID:5100
TrivialName: PA14_07950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07950
PAO1 Ortholog Locus:PA0610
Sequence Length:315
Protein Length:104
Start: 685781
Stop: 685467
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03999.1|AE004497_6 (AE004497) transcriptional regulator PrtN [Pseudomonas aeruginosa PAO1]
Identities = 103/104 (99%), Positives = 104/104 (100%)
Sequence:
ATGCAGCCAACCATCGCCCCTAGCACTCCGATTCCACGCCAGGAAACCGTGGAATTGGTCTACCGCATCTTC
GGCGACGTCCTGGTGCCGCTGGAGCAGGTTCGCGAACGCTGGTTTCGCAACCTGAACAAGGAAAACTTCAGC
AAGGCCCTGGCATGCGGGCGGATCGCCCTGCCAGTGACGACCCTCGACGATAGCCACAAGGCCATGCAGTTC
GTGGCCCTCGATCACCTCGCCGCCTACGTCGACCAGCGCGCGAACCAAGCCGGAAGCGCCCGTCGAGCACAG
CCAGGCGCGGACAGCATCGCATCCTGA
Translation:
MQPTIAPSTPIPRQETVELVYRIFGDVLVPLEQVRERWFRNLNKENFSKALACGRIALPVTTLDDSHKAMQF
VALDHLAAYVDQRANQAGSARRAQPGADSIAS*
AnnotationID:5105GeneID:5100
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:05
Gene Name:prtN
Confidence Code:1
GeneProduct:transcriptional regulator PrtN
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:positive regulator of pyocin genes
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68639.1|AE016493_9 (AE016785) pyocin R2_PP, transcriptional activator prtN
           [Pseudomonas putida KT2440]
          Length = 105

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 44/86 (51%), Positives = 62/86 (72%)

>gb|AAO56903.1| (AE016868) transcriptional regulator, putative [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 107

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10200




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27344




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35257




  
Author/Investigator(s):
        Matsui H, Sano Y, Ishihara H, Shinomiya T.





  
Title:
        Regulation of pyocin genes in Pseudomonas aeruginosa by positive (prtN) and negative (prtR) regulatory genes.




  
PubMed:
        8444788


MedLine:
        




    
Source:
J Bacteriol. 1993 Mar;175(5):1257-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8444788

















    ReferenceID:35258




  
Author/Investigator(s):
        Nakayama K, Takashima K, Ishihara H, Shinomiya T, Kageyama M, Kanaya S, Ohnishi M, Murata T, Mori H, Hayashi T.





  
Title:
        The R-type pyocin of Pseudomonas aeruginosa is related to P2 phage, and the F-type is related to lambda phage.




  
PubMed:
        11069649


MedLine:
        




    
Source:
Mol Microbiol. 2000 Oct;38(2):213-31.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11069649

















    ReferenceID:35259




  
Author/Investigator(s):
        Shinomiya T, Shiga S, Kikuchi A, Kageyama M.





  
Title:
        Genetic determinant of pyocin R2 in Pseudomonas aeruginosa PAO. II. Physical characterization of pyocin R2 genes using R-prime plasmids constructed from R68.45.




  
PubMed:
        6306394


MedLine:
        




    
Source:
Mol Gen Genet. 1983;189(3):382-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6306394









           
Homologs By Global Alignment 

           

       



     
Gene ID:5100
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7508
                           PA0610_tr
                           translation of PA0610
                           104
                           99.03
                           99.99
                           0
                           526.0
     

     
     
193263
                           gb|AAG03999.1|AE004497_6
                           (AE004497) transcriptional regulator PrtN [Pseudomonas aeruginosa PAO1]
                           104
                           99.03
                           99.99
                           0
                           526.0
     

     
     
193264
                           dbj|BAA02199.1|
                           (D12706) positive regulator of pyocin genes [Pseudomonas aeruginosa]
                           104
                           99.03
                           99.99
                           0
                           526.0
     

     
     
193265
                           dbj|BAA83131.1|
                           (AB030826) PRF3~similar to various phage activator [Pseudomonas aeruginosa]
                           104
                           99.03
                           99.99
                           0
                           526.0
     

     
     
193266
                           dbj|BAA83145.1|
                           (AB030825) PRF3~similar to various phage activator [Pseudomonas aeruginosa]
                           104
                           99.03
                           99.99
                           0
                           526.0
     

     






      

          
GC ORFID: 48102How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0610Glimmer Score: 

          
Start: 6487124Stop: 6486810

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0610 translation of PA0610Homolog Bit Score 207.0

          
Other Homologs:  t_PA0610 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCCAACCATCGCCCCTAGCACTCCGATTCCACGCCAGGAAACCGTGGAATTGGTCTACCGCATCTTC 
GGCGACGTCCTGGTGCCGCTGGAGCAGGTTCGCGAACGCTGGTTTCGCAACCTGAACAAGGAAAACTTCAGC 
AAGGCCCTGGCATGCGGGCGGATCGCCCTGCCAGTGACGACCCTCGACGATAGCCACAAGGCCATGCAGTTC 
GTGGCCCTCGATCACCTCGCCGCCTACGTCGACCAGCGCGCGAACCAAGCCGGAAGCGCCCGTCGAGCACAG 
CCAGGCGCGGACAGCATCGCATCCTGA