ViewGene
Locus Name:
GeneID:
Location:

GeneID:510
TrivialName: PA14_19360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19360
PAO1 Ortholog Locus:PA3460
Sequence Length:1758
Protein Length:585
Start: 1673239
Stop: 1671482
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06848.1|AE004766_9 (AE004766) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 585/585 (100%), Positives = 585/585 (100%)
Sequence:
ATGAAAGGCCACTTGCATCTGCCTCACCCGCACAACCAGCGCCTGCAACGTATCCAGGCGCCCACCTACGAA
CGCCTGCAGGCGCGTCTCGCCGAAGATCACAGCGAGCCCACCGAGAAACCGCTGAGCATCCACTGCGGCTGG
GGCCGCCTGCTGATCGGGCAGACCTACCCGGACGCCGAGGAACTGGCCCGCGACCTGTTGCAGGAAGCCCCC
GGCGAACGCGACATCGCGCTCTACGTGGCGGCGCCGCAGCAGGTCCTGGCCCACGCCCCGCAGCAGCTCTTC
CTCGATCCCTCGGATACCCTGCGCCTGTGGTTCACCGACTACCGCCCGGCGCGCCGTCCGCCACGCGGTTTC
CGCATCCGCCGGGTGCATACCGAGGAGGACTGGGCGGCGATCAACCGCCTGTACCTGGCGCGCGGCATGCTT
CCGGTGCAGACCGAGCGCCTCAGCCCGCGCCACCAGGGCGGGCCGATCTACTGGCTGGCCGAGGACGCCGAC
ACTGGCGTCGCGGTAGGCACGGTGATGGGCCTCAACCACGCCAAGGCGTTCCAGGACCCGGAGGGGGGCTCC
AGCCTCTGGTGCCTGGCGGTGGACCCGCAATGCAGCCGGCCGGGCGTCGGCGAGGCGTTGGTGCGGCACCTG
GTCGAGCACTTCATGAGCCGCGAACTGGCCTACCTCGACCTCTCGGTGCTGCACAACAACCAGCAGGCCAAG
GCGCTCTACCGCAAGCTCGGCTTCCGCGAACTGGCGACCTTCACCATCAAGCGCAAGAACGGCATCAACCAG
TCGCTGTTCCTCGGCCCCGGCCCGGAGGAAGACCTCAACCCCTACGCCCGGATCATCGTCGACGAGGCCCAC
CGGCGCGGCATCGAGGTGCGCGTCGACGACGCCGAGGGCGGCCTGTTCACCCTGACCCAGGGCGGCCGGCAG
ATCCGCTGCCGTGAATCGCTCTCCGACCTGACCACGGCGGTAAGCATGACCCTCTGCCAGGACAAGGTCCTC
ACCCACCGCGCCCTGCAGCACGCCGGCCTGCGCCAGCCGCAGCAGCGCCTGGCCGGCAGCGCGGAGGAAAAC
GCCGCGTTCCTCGCCGAGCACGGTTCGCTGGTGGTCAAGCCGGTGGACGGCGAGCAGGGCCAGGGCGTGGCG
GTGGACCTGCGCACCGCGGAAGAGGTCGAGGAGGCCATCGAGGCCGCCCGCCATTTCGATTCGCGCGTGCTG
CTGGAGAGCTACCACGCCGGCCACGACCTGCGCGTGCTGGTGATCGGCTACGAGGTGGTGGCCGCCGCCATC
CGTCGTCCCGCCGCGGTGATCGGCGACGGTCGGCACAGCATCCGCGAGCTGATCGAGGCGCAGAGCCGCCGG
CGCCAGGCCGCCACCGGCGGGGAAAGCCGCATCCCGCTCGACCACGAGACCGAGCGCACCCTGCGGGCCGCC
ggCTATGGCTACGACGACGTGCTGCCCAGCGGCGAACACCTGGCCGTGCGGCGCACCGCCAACCTGCACACC
GGCGGCATCCTCGAGGACGTCACCGACGCCCTCCATCCGGCCCTCCGCGAGGCCGCGATCCAGGCCGCGCGG
GCCCTGGAAATACCGGTGGTGGGCCTGGACTTCCTGGTCGAGGCCGCCGACCAGCCCGACTACGTGATCATC
GAAGCCAACGAGCGCGCCGGCCTGGCCAACCACGAGCCGCAGCCGACCGCCGAACGCTTCGTCGATCTTCTC
TTCCCCCTCAGCCGCGAGGTGCCTTCATGA
Translation:
MKGHLHLPHPHNQRLQRIQAPTYERLQARLAEDHSEPTEKPLSIHCGWGRLLIGQTYPDAEELARDLLQEAP
GERDIALYVAAPQQVLAHAPQQLFLDPSDTLRLWFTDYRPARRPPRGFRIRRVHTEEDWAAINRLYLARGML
PVQTERLSPRHQGGPIYWLAEDADTGVAVGTVMGLNHAKAFQDPEGGSSLWCLAVDPQCSRPGVGEALVRHL
VEHFMSRELAYLDLSVLHNNQQAKALYRKLGFRELATFTIKRKNGINQSLFLGPGPEEDLNPYARIIVDEAH
RRGIEVRVDDAEGGLFTLTQGGRQIRCRESLSDLTTAVSMTLCQDKVLTHRALQHAGLRQPQQRLAGSAEEN
AAFLAEHGSLVVKPVDGEQGQGVAVDLRTAEEVEEAIEAARHFDSRVLLESYHAGHDLRVLVIGYEVVAAAI
RRPAAVIGDGRHSIRELIEAQSRRRQAATGGESRIPLDHETERTLRAAGYGYDDVLPSGEHLAVRRTANLHT
GGILEDVTDALHPALREAAIQAARALEIPVVGLDFLVEAADQPDYVIIEANERAGLANHEPQPTAERFVDLL
FPLSREVPS*
AnnotationID:519GeneID:510
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 21:09:26
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase, GNAT family
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583,COG1181
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67369.1|AE016363_1 (AE016780) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 581

 Score =  892 bits (2305), Expect = 0.0
 Identities = 438/571 (76%), Positives = 494/571 (86%)

>gb|AAO55152.1| (AE016861) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 582

 Score =  871 bits (2250), Expect = 0.0
 Identities = 428/573 (74%), Positives = 487/573 (84%)






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. 
This family contains proteins with N-acetyltransferase functions. 
CD-Length = 82 residues,  92.7% aligned
Score = 55.3 bits (133), Expect = 2e-08
Identities = 26/76 (34%), Positives = 42/76 (55%)

COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes 
[Cell envelope biogenesis, outer membrane]
CD-Length = 317 residues,  99.1% aligned
Score =  164 bits (417), Expect = 2e-41
Identities = 73/325 (22%), Positives = 111/325 (34%), Gaps = 27/325 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1023




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18165




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32104




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:510_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:510
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
900
                           PA3460_tr
                           translation of PA3460
                           585
                           99.99
                           99.99
                           0
                           3029.0
     

     
     
36722
                           gb|AAG06848.1|AE004766_9
                           (AE004766) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           585
                           99.99
                           99.99
                           0
                           3029.0
     

     
     
36723
                           gb|AAN67369.1|AE016363_1
                           (AE016780) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           585
                           75.38
                           85.12
                           4
                           2306.0
     

     
     
36724
                           gb|AAO55152.1|
                           (AE016861) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           585
                           73.50
                           83.76
                           3
                           2240.0
     

     
     
36725
                           emb|CAC48864.1|
                           (AL603643) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           603
                           50.24
                           64.51
                           26
                           1460.0
     

     






      

          
GC ORFID: 43512How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3460Glimmer Score: 

          
Start: 3280693Stop: 3282450

          
Length: 1758


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3460 translation of PA3460Homolog Bit Score 1171.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5989 (ORF: BLASTX 877.0), t_PA3460 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGGCCACTTGCATCTGCCTCACCCGCACAACCAGCGCCTGCAACGTATCCAGGCGCCCACCTACGAA 
CGCCTGCAGGCGCGTCTCGCCGAAGATCACAGCGAGCCCACCGAGAAACCGCTGAGCATCCACTGCGGCTGG 
GGCCGCCTGCTGATCGGGCAGACCTACCCGGACGCCGAGGAACTGGCCCGCGACCTGTTGCAGGAAGCCCCC 
GGCGAACGCGACATCGCGCTCTACGTGGCGGCGCCGCAGCAGGTCCTGGCCCACGCCCCGCAGCAGCTCTTC 
CTCGATCCCTCGGATACCCTGCGCCTGTGGTTCACCGACTACCGCCCGGCGCGCCGTCCGCCACGCGGTTTC 
CGCATCCGCCGGGTGCATACCGAGGAGGACTGGGCGGCGATCAACCGCCTGTACCTGGCGCGCGGCATGCTT 
CCGGTGCAGACCGAGCGCCTCAGCCCGCGCCACCAGGGCGGGCCGATCTACTGGCTGGCCGAGGACGCCGAC 
ACTGGCGTCGCGGTAGGCACGGTGATGGGCCTCAACCACGCCAAGGCGTTCCAGGACCCGGAGGGGGGCTCC 
AGCCTCTGGTGCCTGGCGGTGGACCCGCAATGCAGCCGGCCGGGCGTCGGCGAGGCGTTGGTGCGGCACCTG 
GTCGAGCACTTCATGAGCCGCGAACTGGCCTACCTCGACCTCTCGGTGCTGCACAACAACCAGCAGGCCAAG 
GCGCTCTACCGCAAGCTCGGCTTCCGCGAACTGGCGACCTTCACCATCAAGCGCAAGAACGGCATCAACCAG 
TCGCTGTTCCTCGGCCCCGGCCCGGAGGAAGACCTCAACCCCTACGCCCGGATCATCGTCGACGAGGCCCAC 
CGGCGCGGCATCGAGGTGCGCGTCGACGACGCCGAGGGCGGCCTGTTCACCCTGACCCAGGGCGGCCGGCAG 
ATCCGCTGCCGTGAATCGCTCTCCGACCTGACCACGGCGGTAAGCATGACCCTCTGCCAGGACAAGGTCCTC 
ACCCACCGCGCCCTGCAGCACGCCGGCCTGCGCCAGCCGCAGCAGCGCCTGGCCGGCAGCGCGGAGGAAAAC 
GCCGCGTTCCTCGCCGAGCACGGTTCGCTGGTGGTCAAGCCGGTGGACGGCGAGCAGGGCCAGGGCGTGGCG 
GTGGACCTGCGCACCGCGGAAGAGGTCGAGGAGGCCATCGAGGCCGCCCGCCATTTCGATTCGCGCGTGCTG 
CTGGAGAGCTACCACGCCGGCCACGACCTGCGCGTGCTGGTGATCGGCTACGAGGTGGTGGCCGCCGCCATC 
CGTCGTCCCGCCGCGGTGATCGGCGACGGTCGGCACAGCATCCGCGAGCTGATCGAGGCGCAGAGCCGCCGG 
CGCCAGGCCGCCACCGGCGGGGAAAGCCGCATCCCGCTCGACCACGAGACCGAGCGCACCCTGCGGGCCGCC 
ggCTATGGCTACGACGACGTGCTGCCCAGCGGCGAACACCTGGCCGTGCGGCGCACCGCCAACCTGCACACC 
GGCGGCATCCTCGAGGACGTCACCGACGCCCTCCATCCGGCCCTCCGCGAGGCCGCGATCCAGGCCGCGCGG 
GCCCTGGAAATACCGGTGGTGGGCCTGGACTTCCTGGTCGAGGCCGCCGACCAGCCCGACTACGTGATCATC 
GAAGCCAACGAGCGCGCCGGCCTGGCCAACCACGAGCCGCAGCCGACCGCCGAACGCTTCGTCGATCTTCTC 
TTCCCCCTCAGCCGCGAGGTGCCTTCATGA