ViewGene

Locus Name:
GeneID:
Location:

GeneID:5097
TrivialName: PA14_60460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60460
PAO1 Ortholog Locus:PA4568
Sequence Length:312
Protein Length:103
Start: 5389089
Stop: 5388778
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07956.1|AE004870_7 (AE004870) 50S ribosomal protein L21 [Pseudomonas aeruginosa PAO1]
Identities = 103/103 (100%), Positives = 103/103 (100%)
Sequence:
ATGTACGCAGTGATTGTTACCGGTGGCAAGCAGCACAAAGTCACCGAAGGCGAATTCCTCAAGGTCGAGAAA
CTCGACGTCGCTACCGGCGAAGCGATCGATTTCGACCGCGTCCTGCTGGTTGCCAATGGCGAAGACGTGAAA
ATCGGCCTGCCGGTCGTCGAAGGTGCGAAGGTTACCGCTGAAGTGGTTTCCCACGGCCGTCACGACAAGGTC
CGCATCATCAAGTTCCGCCGTCGTAAGCACCACATGAAGCGTCAGGGCCACCGCCAGTGGTTCACTGAAATC
AAGATCACCGGCATTCAGGCCTAA
Translation:
MYAVIVTGGKQHKVTEGEFLKVEKLDVATGEAIDFDRVLLVANGEDVKIGLPVVEGAKVTAEVVSHGRHDKV
RIIKFRRRKHHMKRQGHRQWFTEIKITGIQA*
AnnotationID:5102GeneID:5097
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 07:07:41
Gene Name:rplU
Confidence Code:2
GeneProduct:ribosomal protein L21
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0261,pfam00829
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66313.1|AE016259_11 (AE016776) ribosomal protein L21 [Pseudomonas putida KT2440]
          Length = 170

 Score =  180 bits (457), Expect = 1e-45
 Identities = 88/102 (86%), Positives = 94/102 (92%)

>gb|AAG58320.1|AE005547_6 (AE005547) 50S ribosomal subunit protein L21 [Escherichia coli
           O157:H7 EDL933]
          Length = 103

 Score =  151 bits (382), Expect = 6e-37
 Identities = 66/103 (64%), Positives = 90/103 (87%)
Structural Features:
COG0261, RplU, Ribosomal protein L21 
[Translation, ribosomal structure and biogenesis]
CD-Length = 103 residues, 100.0% aligned
Score =  138 bits (350), Expect = 2e-34
Identities = 66/103 (64%), Positives = 82/103 (79%)

pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein.
CD-Length = 96 residues, 100.0% aligned
Score =  125 bits (315), Expect = 2e-30
Identities = 53/96 (55%), Positives = 73/96 (76%)
Genomic Context:
Comment:
ReferenceID:10194
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27338
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31645
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5097_cdd.html
URL:
ReferenceID:33114
Author/Investigator(s): Kitakawa M, Dabbs ER, Isono K
Title: Genes coding for ribosomal proteins S15, L21, and L27 map near argG in Escherichia coli.
PubMed: 378941
MedLine:
Source:
J Bacteriol. 1979 Jun;138(3):832-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=378941
Homologs By Global Alignment
Gene ID:5097

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7505 PA4568_tr translation of PA4568 103 99.99 99.99 0 528.0
193106 gb|AAG07956.1|AE004870_7 (AE004870) 50S ribosomal protein L21 [Pseudomonas aeruginosa PAO1] 103 99.99 99.99 0 528.0
193108 gb|AAO54339.1| (AE016858) ribosomal protein L21 [Pseudomonas syringae pv. tomato str. DC3000] 103 79.61 89.32 0 440.0
193113 dbj|BAC93234.1| (AP005331) ribosomal protein L21 [Vibrio vulnificus YJ016] 103 70.87 86.40 0 405.0
193110 gb|AAF93608.1| (AE004131) ribosomal protein L21 [Vibrio cholerae O1 biovar eltor str. N16961] 103 70.87 86.40 0 405.0
GC ORFID: 48099How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4568Glimmer Score:
Start: 4652769Stop: 4652458
Length: 312
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4568 translation of PA4568Homolog Bit Score 207.0
Other Homologs: t_PA4568 (ORF: GLIMMER)
GC ORF Sequence
ATGTACGCAGTGATTGTTACCGGTGGCAAGCAGCACAAAGTCACCGAAGGCGAATTCCTCAAGGTCGAGAAA
CTCGACGTCGCTACCGGCGAAGCGATCGATTTCGACCGCGTCCTGCTGGTTGCCAATGGCGAAGACGTGAAA
ATCGGCCTGCCGGTCGTCGAAGGTGCGAAGGTTACCGCTGAAGTGGTTTCCCACGGCCGTCACGACAAGGTC
CGCATCATCAAGTTCCGCCGTCGTAAGCACCACATGAAGCGTCAGGGCCACCGCCAGTGGTTCACTGAAATC
AAGATCACCGGCATTCAGGCCTAA