ViewGene

Locus Name:
GeneID:
Location:

GeneID:5096
TrivialName: PA14_21240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21240
PAO1 Ortholog Locus:PA3307
Sequence Length:309
Protein Length:102
Start: 1840369
Stop: 1840677
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06695.1|AE004753_3 (AE004753) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/102 (99%), Positives = 101/102 (99%)
Sequence:
ATGCTTCCGCCGATCCCCCAGGGCCTGATCCCGGTCACCGTCCAGCAGGACCCGCCCAAGCCCCGTCCGGCC
ACGCCGCCGGTCGCGCCGACCCAGGCTGGCGCGGGCAGCGATGGCGTCGCCTTGCGCCAGGAGCGCGACGAG
GAAAGCTGGCTGGAAGAGGAATACCGCCGTCGCCAGCGCCGCCAGGGCGGCGAGGCGCACGCGCGGAGCGAC
GAGGGGGACGAGGCGCCGGCTGACGAGGCGGGGGAGAGCGCCCAGGCGGACGAGCCGCCGCGCAAGGGACAA
TTGATCGACATCGAAGTGTAA
Translation:
MLPPIPQGLIPVTVQQDPPKPRPATPPVAPTQAGAGSDGVALRQERDEESWLEEEYRRRQRRQGGEAHARSD
EGDEAPADEAGESAQADEPPRKGQLIDIEV*
AnnotationID:5101GeneID:5096
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3307
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10192
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27336
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5096

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7504 PA3307_tr translation of PA3307 102 99.01 99.01 0 526.0
193105 gb|AAG06695.1|AE004753_3 (AE004753) hypothetical protein PA3307 [Pseudomonas aeruginosa PAO1] 102 99.01 99.01 0 526.0
GC ORFID: 48098How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3307Glimmer Score:
Start: 3113562Stop: 3113254
Length: 309
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3307 translation of PA3307Homolog Bit Score 207.0
Other Homologs: t_PA3307 (ORF: GLIMMER)
GC ORF Sequence
ATGCTTCCGCCGATCCCCCAGGGCCTGATCCCGGTCACCGTCCAGCAGGACCCGCCCAAGCCCCGTCCGGCC
ACGCCGCCGGTCGCGCCGACCCAGGCTGGCGCGGGCAGCGATGGCGTCGCCTTGCGCCAGGAGCGCGACGAG
GAAAGCTGGCTGGAAGAGGAATACCGCCGTCGCCAGCGCCGCCAGGGCGGCGAGGCGCACGCGCGGAGCGAC
GAGGGGGACGAGGCGCCGGCTGACGAGGCGGGGGAGAGCGCCCAGGCGGACGAGCCGCCGCGCAAGGGACAA
TTGATCGACATCGAAGTGTAA