ViewGene
Locus Name:
GeneID:
Location:

GeneID:5095
TrivialName: PA14_23480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23480
PAO1 Ortholog Locus:PA3140
Sequence Length:330
Protein Length:109
Start: 2043798
Stop: 2044127
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06528.1|AE004738_2 (AE004738) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 107/109 (98%), Positives = 109/109 (100%)
Sequence:
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCG
GTCGCCGTCGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAAT
ATCAATACGGTCGACGAGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATC
CTCGAGTATCGTGCGGCCCATGGTCCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCG
GCGTTGCTGGAGAAGAACCGGTCGCGGATCGTCATCGAGTGA
Translation:
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAI
LEYRAAHGPFVSVDQLLEVKGVGPALLEKNRSRIVIE*
AnnotationID:5100GeneID:5095
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 11:11:54
Gene Name:
Confidence Code:3
GeneProduct:putative competence protein
Cell Localization:()
Synonyms:PA3140
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1555
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67432.1|AE016370_7 (AE016780) ComEA-related protein [Pseudomonas putida KT2440]
          Length = 112

 Score = 98.2 bits (243), Expect = 8e-21
 Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 7/109 (6%)

>gb|AAO55277.1| (AE016862) competence protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 109

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 7/105 (6%)

>emb|CAC92387.1| (AJ414155) putative exported protein [Yersinia pestis CO92]
          Length = 148

 Score = 71.6 bits (174), Expect = 8e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%)






 
Structural Features:
COG1555, ComEA, DNA uptake protein and related DNA-binding proteins 
[DNA replication, recombination, and repair]
CD-Length = 149 residues, only  72.5% aligned
Score = 87.5 bits (216), Expect = 2e-19
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10190




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27334




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32382




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5095_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5095
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7503
                           PA3140_tr
                           translation of PA3140
                           109
                           98.16
                           99.99
                           0
                           526.0
     

     
     
193104
                           gb|AAG06528.1|AE004738_2
                           (AE004738) hypothetical protein PA3140 [Pseudomonas aeruginosa PAO1]
                           109
                           98.16
                           99.99
                           0
                           526.0
     

     






      

          
GC ORFID: 48097How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3140Glimmer Score: 

          
Start: 2910133Stop: 2909804

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3140 translation of PA3140Homolog Bit Score 207.0

          
Other Homologs:  t_PA3140 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCG 
GTCGCCGTCGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAAT 
ATCAATACGGTCGACGAGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATC 
CTCGAGTATCGTGCGGCCCATGGTCCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCG 
GCGTTGCTGGAGAAGAACCGGTCGCGGATCGTCATCGAGTGA