ViewGene
Locus Name:
GeneID:
Location:

GeneID:5094
TrivialName: PA14_33370
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33370
PAO1 Ortholog Locus:PA2422
Sequence Length:315
Protein Length:104
Start: 2937790
Stop: 2937476
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05810.1|AE004669_7 (AE004669) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%) with PA2422 of PAO1.
Sequence:
ATGGCTAAGCCGAATGATACGTCCAACCCCGAGGTAACAGAATCGTCCCCCCGCTTCGTCCCGCTGCTCCCC
ACCTCCCAGGCCGACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTG
TTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAA
GAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAA
ATCGAGGCGGGCCACCCGAGCCTGTAG
Translation:
MAKPNDTSNPEVTESSPRFVPLLPTSQADMCPRSATLYVDTHALPTHLFDNAKVRLRSAINILAMTRLLDEK
EEPGGTLAYINGALLSLLSDALSEIEAGHPSL*
AnnotationID:5099GeneID:5094
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:38
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2422
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA2422 of PAO1 (hypothetical protein).






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10188




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27332




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5094
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7502
                           PA2422_tr
                           translation of PA2422
                           104
                           99.99
                           99.99
                           0
                           527.0
     

     
     
193103
                           gb|AAG05810.1|AE004669_7
                           (AE004669) hypothetical protein PA2422 [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           527.0
     

     






      

          
GC ORFID: 48096How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2422Glimmer Score: 

          
Start: 2016126Stop: 2016440

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2422 translation of PA2422Homolog Bit Score 207.0

          
Other Homologs:  t_PA2422 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTAAGCCGAATGATACGTCCAACCCCGAGGTAACAGAATCGTCCCCCCGCTTCGTCCCGCTGCTCCCC 
ACCTCCCAGGCCGACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTG 
TTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAA 
GAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAA 
ATCGAGGCGGGCCACCCGAGCCTGTAG