ViewGene
Locus Name:
GeneID:
Location:

GeneID:5093
TrivialName: PA14_50510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50510
PAO1 Ortholog Locus:PA1075
Sequence Length:318
Protein Length:105
Start: 4486651
Stop: 4486334
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04464.1|AE004539_6 (AE004539) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/105 (100%), Positives = 105/105 (100%)
Sequence:
ATGACAGAACAAACTAGCACCCTCTATGCCAAGCTGCTCGGCGAGACCGCGGTCATTTCCTGGGCCGAGCTG
CAACCGTTCTTCGCCCGTGGCGCCTTGCTCCAGGTCGATGCCGCGCTGGACCTGGTGGAAGTCGCCGAGGCC
CTGGCCGGGGACGACCGCGAGAAGGTCGCCGCCTGGCTTTCCGGCGGCGGCCTGAGCAAGGTCGGGGAGGAC
GCGGCCAAGGACTTCCTCGAACGCGACCCGACCCTCTGGGCGGTGGTGGTGGCGCCCTGGGTGGTCATTCAG
GAACGCGCGGAAAAAGCGACGTTGCACTGA
Translation:
MTEQTSTLYAKLLGETAVISWAELQPFFARGALLQVDAALDLVEVAEALAGDDREKVAAWLSGGGLSKVGED
AAKDFLERDPTLWAVVVAPWVVIQERAEKATLH*
AnnotationID:5098GeneID:5093
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 18:06:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1075
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5626
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5626, Uncharacterized small conserved protein [Function unknown]
       CD-Length = 97 residues, 100.0% aligned
       Score =  126 bits (317), Expect = 4e-31






   
Genomic Context:






   
Comment:


















    ReferenceID:10186




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27330




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5093
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7501
                           PA1075_tr
                           translation of PA1075
                           105
                           99.99
                           99.99
                           0
                           528.0
     

     
     
193100
                           gb|AAG04464.1|AE004539_6
                           (AE004539) hypothetical protein PA1075 [Pseudomonas aeruginosa PAO1]
                           105
                           99.99
                           99.99
                           0
                           528.0
     

     
     
193101
                           gb|AAO57563.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           108
                           59.25
                           73.14
                           7
                           328.0
     

     
     
193102
                           gb|AAN66767.1|AE016305_2
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           127
                           41.73
                           55.90
                           24
                           265.0
     

     






      

          
GC ORFID: 48095How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1075Glimmer Score: 

          
Start: 467257Stop: 467574

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1075 translation of PA1075Homolog Bit Score 207.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6304 (ORF: BLASTX 132.0), t_PA1075 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGAACAAACTAGCACCCTCTATGCCAAGCTGCTCGGCGAGACCGCGGTCATTTCCTGGGCCGAGCTG 
CAACCGTTCTTCGCCCGTGGCGCCTTGCTCCAGGTCGATGCCGCGCTGGACCTGGTGGAAGTCGCCGAGGCC 
CTGGCCGGGGACGACCGCGAGAAGGTCGCCGCCTGGCTTTCCGGCGGCGGCCTGAGCAAGGTCGGGGAGGAC 
GCGGCCAAGGACTTCCTCGAACGCGACCCGACCCTCTGGGCGGTGGTGGTGGCGCCCTGGGTGGTCATTCAG 
GAACGCGCGGAAAAAGCGACGTTGCACTGA