ViewGene

Locus Name:
GeneID:
Location:

GeneID:5092
TrivialName: PA14_08900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08900
PAO1 Ortholog Locus:PA4258
Sequence Length:333
Protein Length:110
Start: 762244
Stop: 762576
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07646.1|AE004841_24 (AE004841) 50S ribosomal protein L22 [Pseudomonas aeruginosa PAO1]
Identities = 110/110 (100%), Positives = 110/110 (100%)
Sequence:
ATGGAAGTAGCCGCTAAGCTGTCGGGCGCTCGTATCTCCGCCCAGAAAGCCCGCTTGGTCGCCGACCAGATC
CGCGGGAAGAAGGTGGGCGAAGCGCTCAACCTCCTGGCTTTCAGCAGTAAGAAAGCCGCCGAGATCATGAAG
AAAGTGCTGGAGTCGGCCGTTGCCAACGCTGAGCACAACGAAGGCGCCGATGTGGATGACCTGAAGGTCTCC
ACCGTCTTCGTCAACGAAGGTCGTTCGCTCAAGCGCATCATGCCGCGTGCCAAAGGCCGTGCTGATCGCATC
GTGAAGCGGTCTTGCCATATCACGGTCAAGGTTGCGGACAAGTAA
Translation:
MEVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVS
TVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVADK*
AnnotationID:5097GeneID:5092
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 12:12:11
Gene Name:rplV
Confidence Code:2
GeneProduct:50S ribosomal protein L22
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00237
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66089.1|AE016238_7 (AE016775) ribosomal protein L22 [Pseudomonas putida KT2440]
          Length = 110

 Score =  208 bits (529), Expect = 5e-54
 Identities = 110/110 (100%), Positives = 110/110 (100%)

>gb|AAO54173.1| (AE016858) ribosomal protein L22 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 110

 Score =  207 bits (526), Expect = 1e-53
 Identities = 109/110 (99%), Positives = 110/110 (100%)

>gb|AAF95732.1| (AE004326) ribosomal protein L22 [Vibrio cholerae]
          Length = 110

 Score =  160 bits (404), Expect = 2e-39
 Identities = 82/110 (74%), Positives = 96/110 (87%)

Structural Features:
pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e. 
CD-Length = 105 residues, 100.0% aligned
Score =  116 bits (291), Expect = 7e-28
Identities = 56/105 (53%), Positives = 72/105 (68%)
Genomic Context:
Comment:
ReferenceID:10184
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27327
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36540
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5092_cdd.html
URL:
ReferenceID:36736
Author/Investigator(s): Zurawski G, Zurawski SM.
Title: Structure of the Escherichia coli S10 ribosomal protein operon.
PubMed: 3892488
MedLine:
Source:
Nucleic Acids Res. 1985 Jun 25;13(12):4521-6.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3892488
ReferenceID:36746
Author/Investigator(s): Wittmann-Liebold B, Greuer B.
Title: Amino acid sequence of protein L22 from the large subunit of the Escherichia coli ribosome.
PubMed: 7007072
MedLine:
Source:
FEBS Lett. 1980 Nov 17;121(1):105-12.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=81114579&dopt=Abstract
Homologs By Global Alignment
Gene ID:5092

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7500 PA4258_tr translation of PA4258 110 99.99 99.99 0 529.0
193012 gb|AAG07646.1|AE004841_24 (AE004841) 50S ribosomal protein L22 [Pseudomonas aeruginosa PAO1] 110 99.99 99.99 0 529.0
193013 gb|AAN66089.1|AE016238_7 (AE016775) ribosomal protein L22 [Pseudomonas putida KT2440] 110 99.99 99.99 0 529.0
193014 gb|AAO54173.1| (AE016858) ribosomal protein L22 [Pseudomonas syringae pv. tomato str. DC3000] 110 99.09 99.99 0 526.0
193015 gb|AAF95732.1| (AE004326) ribosomal protein L22 [Vibrio cholerae O1 biovar eltor str. N16961] 110 74.54 87.27 0 404.0
GC ORFID: 48094How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4258Glimmer Score:
Start: 4191695Stop: 4191363
Length: 333
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4258 translation of PA4258Homolog Bit Score 208.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5190 (ORF: BLASTX 207.0), t_PA4258 (ORF: GLIMMER)
GC ORF Sequence
ATGGAAGTAGCCGCTAAGCTGTCGGGCGCTCGTATCTCCGCCCAGAAAGCCCGCTTGGTCGCCGACCAGATC
CGCGGGAAGAAGGTGGGCGAAGCGCTCAACCTCCTGGCTTTCAGCAGTAAGAAAGCCGCCGAGATCATGAAG
AAAGTGCTGGAGTCGGCCGTTGCCAACGCTGAGCACAACGAAGGCGCCGATGTGGATGACCTGAAGGTCTCC
ACCGTCTTCGTCAACGAAGGTCGTTCGCTCAAGCGCATCATGCCGCGTGCCAAAGGCCGTGCTGATCGCATC
GTGAAGCGGTCTTGCCATATCACGGTCAAGGTTGCGGACAAGTAA