ViewGene
Locus Name:
GeneID:
Location:

GeneID:5091
TrivialName: PA14_10830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10830
PAO1 Ortholog Locus:
Sequence Length:876
Protein Length:291
Start: 937824
Stop: 936949
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM86219.1|AE013869_4 (AE013869) putative transcriptional regulator LYSR-type [Yersinia pestis KIM]
Identities = 112/279 (40%), Positives = 165/279 (59%), Gaps = 2/279 (0%)
Sequence:
GTGCAATTGTCTCAGCTCCGCGCCTTCTGCGCCGTGGCCCACACCGGCTCGATCAACGCCGCGGCGAAGGCG
CTGAACCGTGTCCCGTCGAGTCTCTCCGTACGCATCCGCCAGCTTGAGGAAGACCTCGGCTGCCAGCTGTTC
CTGCGCGAGCACCAGCGTCTGCGCCTGTCGCCGGACGGTCGGCGTCTGCTGGAGCATGCCCGGCGAATCCTC
GATCTCAGCGACAGTACCCGGGCCATGATGCGCAACGAAGAGAGCGGCGGCCGCCTGGTGGTAGGTGCCCTC
GACGTGGTTCTGGTCGCCTTCATGCCATGCCTGATCGGGCGGTTCCGCCAACGCCACCGCGCGATCGAACTG
GACATCCGCAGCGAAGCCTCGGAAGCCTTGGTGCAGCAGGTCTCGGATGGAGTGCTAGACCTGGCCCTGAGC
GATGGTCCCGTGCGCTCTCAGACCCTGGAAAGTAGCCTGGCCTTCGTCGACGAAATGGTGCTGGTTACCGAG
CTGGATCATCCACCGATCACCAGTCCGCGCGACCTGCGTTGCGCCGAACTGTATGGGTTCCGTCACGACTGC
TCGTTCCGCTTCCGCATGGATCGCTGGCTGGAGGAAGCCGACTGCCTGCAACAACTGCCAGTGCTGGAAATC
GAGTCCTACCACACCATGCTCGCCTGCGTCAGCGCAGGCATGGGTGCCGCCTGGGTGCTGCGCTCCGTGCTT
GCGACGCTACCTGGCAACCACCAGGTCCGCGCGCATCCGTTGCGCGACTATGGCACCACCGAGATCCATTTC
ATCTGGCACAGCGGCCATCTCACGCCCAACGCGCAACGCTTGATGGCTGTACACCAGGACGCGCTCGTCGAG
CGCCGCGACTGA
Translation:
MQLSQLRAFCAVAHTGSINAAAKALNRVPSSLSVRIRQLEEDLGCQLFLREHQRLRLSPDGRRLLEHARRIL
DLSDSTRAMMRNEESGGRLVVGALDVVLVAFMPCLIGRFRQRHRAIELDIRSEASEALVQQVSDGVLDLALS
DGPVRSQTLESSLAFVDEMVLVTELDHPPITSPRDLRCAELYGFRHDCSFRFRMDRWLEEADCLQQLPVLEI
ESYHTMLACVSAGMGAAWVLRSVLATLPGNHQVRAHPLRDYGTTEIHFIWHSGHLTPNAQRLMAVHQDALVE
RRD*
AnnotationID:5096GeneID:5091
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 11:11:17
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM86219.1|AE013869_4 (AE013869) putative transcriptional regulator LYSR-type [Yersinia
           pestis KIM]
          Length = 289

 Score =  211 bits (536), Expect = 5e-54
 Identities = 112/279 (40%), Positives = 165/279 (59%), Gaps = 2/279 (0%)

>gb|AAN68760.1|AE016508_1 (AE016785) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 288

 Score =  204 bits (519), Expect = 5e-52
 Identities = 111/270 (41%), Positives = 160/270 (59%), Gaps = 2/270 (0%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  95.3% aligned
Score =  125 bits (313), Expect = 8e-30
Identities = 98/286 (34%), Positives = 138/286 (48%), Gaps = 10/286 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  99.5% aligned
Score =  100 bits (251), Expect = 2e-22
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 7/209 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15252




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27325




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36836




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5091_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5091
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7499
                           PA0708_tr
                           translation of PA0708
                           293
                           40.61
                           58.36
                           11
                           532.0
     

     
     
193010
                           gb|AAG04097.1|AE004506_7
                           (AE004506) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           293
                           40.27
                           58.36
                           11
                           529.0
     

     
     
193011
                           gb|AAN68760.1|AE016508_1
                           (AE016785) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           295
                           39.32
                           57.28
                           11
                           521.0
     

     






      

          
GC ORFID: 48093How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0708Glimmer Score: 

          
Start: 4016113Stop: 4016988

          
Length: 876


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0708 translation of PA0708Homolog Bit Score 208.0

          
Other Homologs:  t_PA0708 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAATTGTCTCAGCTCCGCGCCTTCTGCGCCGTGGCCCACACCGGCTCGATCAACGCCGCGGCGAAGGCG 
CTGAACCGTGTCCCGTCGAGTCTCTCCGTACGCATCCGCCAGCTTGAGGAAGACCTCGGCTGCCAGCTGTTC 
CTGCGCGAGCACCAGCGTCTGCGCCTGTCGCCGGACGGTCGGCGTCTGCTGGAGCATGCCCGGCGAATCCTC 
GATCTCAGCGACAGTACCCGGGCCATGATGCGCAACGAAGAGAGCGGCGGCCGCCTGGTGGTAGGTGCCCTC 
GACGTGGTTCTGGTCGCCTTCATGCCATGCCTGATCGGGCGGTTCCGCCAACGCCACCGCGCGATCGAACTG 
GACATCCGCAGCGAAGCCTCGGAAGCCTTGGTGCAGCAGGTCTCGGATGGAGTGCTAGACCTGGCCCTGAGC 
GATGGTCCCGTGCGCTCTCAGACCCTGGAAAGTAGCCTGGCCTTCGTCGACGAAATGGTGCTGGTTACCGAG 
CTGGATCATCCACCGATCACCAGTCCGCGCGACCTGCGTTGCGCCGAACTGTATGGGTTCCGTCACGACTGC 
TCGTTCCGCTTCCGCATGGATCGCTGGCTGGAGGAAGCCGACTGCCTGCAACAACTGCCAGTGCTGGAAATC 
GAGTCCTACCACACCATGCTCGCCTGCGTCAGCGCAGGCATGGGTGCCGCCTGGGTGCTGCGCTCCGTGCTT 
GCGACGCTACCTGGCAACCACCAGGTCCGCGCGCATCCGTTGCGCGACTATGGCACCACCGAGATCCATTTC 
ATCTGGCACAGCGGCCATCTCACGCCCAACGCGCAACGCTTGATGGCTGTACACCAGGACGCGCTCGTCGAG 
CGCCGCGACTGA