ViewGene
Locus Name:
GeneID:
Location:

GeneID:5090
TrivialName: PA14_21570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21570
PAO1 Ortholog Locus:PA3284
Sequence Length:315
Protein Length:104
Start: 1870142
Stop: 1870456
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06672.1|AE004750_10 (AE004750) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGAAAAAGATTTCCCTCGCTTCCTCCGTCGTCGGCGCTGCTCTGCTCGGCGTAGCCAGTGTCGGCGCGCAT
GCCGCGCAGAATCCCTTCGCCGTGCAGGAGCTGAGCAGCGGCTACAGCGTGGCTGCCGCCGAGAAGGCCAAG
GAAGGTTCCTGCGGCGAGGCCAAGTGCGGTGCCGACAAGGGCAAGCGCGAAGCCTCCAAGGCCGGCCATGAA
GGCAGCTGCGGTGCGGATCGCAAGGCCAAGGAAGGTTCCTGCGGTGGCGAGAAGAAGGCCGGCGAAGGCAAC
TGCGGCGCCGACAAGAAGAAGTCGTAA
Translation:
MKKISLASSVVGAALLGVASVGAHAAQNPFAVQELSSGYSVAAAEKAKEGSCGEAKCGADKGKREASKAGHE
GSCGADRKAKEGSCGGEKKAGEGNCGADKKKS*
AnnotationID:5095GeneID:5090
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 06:06:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3284
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10180




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27323




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5090
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7498
                           PA3284_tr
                           translation of PA3284
                           104
                           99.99
                           99.99
                           0
                           530.0
     

     
     
193009
                           gb|AAG06672.1|AE004750_10
                           (AE004750) hypothetical protein PA3284 [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           530.0
     

     






      

          
GC ORFID: 48092How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3284Glimmer Score: 

          
Start: 3083789Stop: 3083475

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3284 translation of PA3284Homolog Bit Score 208.0

          
Other Homologs:  t_PA3284 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAAGATTTCCCTCGCTTCCTCCGTCGTCGGCGCTGCTCTGCTCGGCGTAGCCAGTGTCGGCGCGCAT 
GCCGCGCAGAATCCCTTCGCCGTGCAGGAGCTGAGCAGCGGCTACAGCGTGGCTGCCGCCGAGAAGGCCAAG 
GAAGGTTCCTGCGGCGAGGCCAAGTGCGGTGCCGACAAGGGCAAGCGCGAAGCCTCCAAGGCCGGCCATGAA 
GGCAGCTGCGGTGCGGATCGCAAGGCCAAGGAAGGTTCCTGCGGTGGCGAGAAGAAGGCCGGCGAAGGCAAC 
TGCGGCGCCGACAAGAAGAAGTCGTAA