ViewGene
Locus Name:
GeneID:
Location:

GeneID:509
TrivialName: PA14_24390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24390
PAO1 Ortholog Locus:PA3074
Sequence Length:1761
Protein Length:586
Start: 2125228
Stop: 2123468
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06462.1|AE004731_10 (AE004731) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 585/586 (99%), Positives = 585/586 (99%)
Sequence:
ATGAACCTGTTGCTGGACGCCTGGCCGCACTGGCTGCGCCCCTACTGGCTGCTGCTGGCGCCGCTGCTTGGC
TGGTTGCTGTGGAAGCTGCTGCATCGCCAGCGTCGTGCCGGACGCTGGCAATTGCTGCTGCCGACGGCCTTC
CAGCCCTGGCTGCTGGTCGGCGGCGCCGGGCGGCAGAACCGCATGCCCTGGATCTGCCTCGGCATCGCCTGG
CTGCTGGCCCTGCTGGCCTTGCTCGGGCCCAGTTGGCAGCAACTGGAACAGCCCTCGATGAAGCGTAGCGAC
CCGCTGGTGGCGATCCTCCAGCTGACTCCCGGGATGCTTGCCGGCGACCTGTCGCCGACCCGCCTGGAGCAG
GCCCGGCGCAAGCTGCTCGACCTGCTTCGCACGCGCAACGACGCGCAGACCGCGATCGTCGTCTACGCCGGC
AGCGCGCATACCCTGGTGCCGCTGTCGGACGACCAGCTCACCGCGCGCAACCTGCTCGACGCCCTGAAACCT
TCGATCATGCCCGAGCCCGGCCAGCGCGCCGACCTCGCCGTGCGCCAGGCCCTCGACCTGCTGGAACAGGGC
GCCCAGGGCCGCGGCCGCCTGCTGCTGCTGACCAGCGGGCTGAGCGAACCCGAGCGCCAGGGCATCCGCAGC
GCCCTCGAGCACCGGGCGGCGCGCCTCGCCGTGCTCGGCGTCGGCACGCCGAAGGGCGCTCCGGTGCAGCAG
GAGGATGGCAGCTTCCTCAAGGACGATCAGGGCGGCATCCTCCTGCCCAGGCTCGACGAAAGCGGGCTGCGC
CGCTTCGCCGCGGAGATCGGCGCCGGCTACCAGCGCCTGCGGCCGAACGACCGCGACCTCGACAGCCTCGGC
CTGCTGGCCCGCGGCGGCACGCTGGAGGAAGACCGCGAGAACGCCCTGCTGCGCCTGCAGCGCTGGGCCGAC
CAGGGTTACTGGCTGCTCCTGCCGCTGCTCCTGCTGGCCGCCTGTGCCGGACGGCGCGGCTGGCTGTTCTGC
CTGCCGCTGTTGATGCTGAGCCTGCCGCAACCGGCCATGGCCTTCCAGTTCGAAGACCTCTGGCTGCGTCCG
GACCAGCAAGGCCAGCGCCTGTTGCAACGAGGCCAGGCGGACGAGGCGGCGAAGCGCTTCGAGGACTTCCGC
TGGAAAGGCCTGTCGCTCTACCAGGCCCGCGACTACGCCGCCGCTGCCCAGGCCTTCGCCCAGGGCGACCAG
GCCGACGATCACTACAACCGTGGCAACGCCCTGGCCCGCCAGGGCGAACTGGAAGCCGCCGTCGACGCCTAC
GAACAAGCCCTGGAGCGCCAGCCGCAACTGGTCGCCGCGCAACGCAACAAGGCCCTGGTCGAGGAACTGCTG
CGCCAGCGCCAGGAACAGGCGGCGCAGCAGCAGGCCGGCGAGAACAAGGAACAGCGCCAGGAAGCGAGCCAG
CAGAGCCCGCCATCCGGAAGCAGCCAGCGGCCGCCGCGCGATGCGGCGACCGTCGATGCGCAGAAGGCCCAG
GCCGCGGCGCCCTCGACCAGCCTGCCGGAAGACGAAGGCGAGAAGACCGCCGGAGCACCCGGCCAAGCGCAG
CCGCAGCCCGACGCCGAGGACGAGCGGACGGGCGACGAGGAAGCCGACGACGGACTCGACGACGAACGTCGC
CAGGCCCTCGAGCAATGGCTGCGACAGATTCCCGACGATCCCGCCGAGTTGCTGCGGCGCAAGTTCTGGTAC
CAACAGCAGCAACGCCAGGAAGCCACGCCATGA
Translation:
MNLLLDAWPHWLRPYWLLLAPLLGWLLWKLLHRQRRAGRWQLLLPTAFQPWLLVGGAGRQNRMPWICLGIAW
LLALLALLGPSWQQLEQPSMKRSDPLVAILQLTPGMLAGDLSPTRLEQARRKLLDLLRTRNDAQTAIVVYAG
SAHTLVPLSDDQLTARNLLDALKPSIMPEPGQRADLAVRQALDLLEQGAQGRGRLLLLTSGLSEPERQGIRS
ALEHRAARLAVLGVGTPKGAPVQQEDGSFLKDDQGGILLPRLDESGLRRFAAEIGAGYQRLRPNDRDLDSLG
LLARGGTLEEDRENALLRLQRWADQGYWLLLPLLLLAACAGRRGWLFCLPLLMLSLPQPAMAFQFEDLWLRP
DQQGQRLLQRGQADEAAKRFEDFRWKGLSLYQARDYAAAAQAFAQGDQADDHYNRGNALARQGELEAAVDAY
EQALERQPQLVAAQRNKALVEELLRQRQEQAAQQQAGENKEQRQEASQQSPPSGSSQRPPRDAATVDAQKAQ
AAAPSTSLPEDEGEKTAGAPGQAQPQPDAEDERTGDEEADDGLDDERRQALEQWLRQIPDDPAELLRRKFWY
QQQQRQEATP*
AnnotationID:518GeneID:509
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 15:03:01
Gene Name:
Confidence Code:3
GeneProduct:putative TPR domain protein
Cell Localization:()
Synonyms:PA3074
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00189
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57232.1| (AE016869) TPR domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 572

 Score =  670 bits (1728), Expect = 0.0
 Identities = 345/576 (59%), Positives = 420/576 (72%), Gaps = 11/576 (1%)

>gb|AAN67642.1|AE016394_3 (AE016781) TPR domain protein [Pseudomonas putida KT2440]
          Length = 572

 Score =  650 bits (1677), Expect = 0.0
 Identities = 331/582 (56%), Positives = 418/582 (71%), Gaps = 15/582 (2%)








 
Structural Features:
cd00189, TPR, Tetratricopeptide repeat domain
CD-Length = 100 residues,  81.0% aligned
Score = 44.7 bits (105), Expect = 3e-05
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1021




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32439




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:509_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:509
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
899
                           PA3074_tr
                           translation of PA3074
                           586
                           99.82
                           99.82
                           0
                           3029.0
     

     
     
36719
                           gb|AAG06462.1|AE004731_10
                           (AE004731) hypothetical protein PA3074 [Pseudomonas aeruginosa PAO1]
                           586
                           99.82
                           99.82
                           0
                           3029.0
     

     
     
36720
                           gb|AAO57232.1|
                           (AE016869) TPR domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           588
                           59.18
                           72.61
                           18
                           1743.0
     

     
     
36721
                           gb|AAN67642.1|AE016394_3
                           (AE016781) TPR domain protein [Pseudomonas putida KT2440]
                           598
                           55.35
                           70.56
                           38
                           1697.0
     

     






      

          
GC ORFID: 43511How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3074Glimmer Score: 

          
Start: 2828702Stop: 2830462

          
Length: 1761


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3074 translation of PA3074Homolog Bit Score 1171.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene667 (ORF: BLASTX 676.0), t_PA3074 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGTTGCTGGACGCCTGGCCGCACTGGCTGCGCCCCTACTGGCTGCTGCTGGCGCCGCTGCTTGGC 
TGGTTGCTGTGGAAGCTGCTGCATCGCCAGCGTCGTGCCGGACGCTGGCAATTGCTGCTGCCGACGGCCTTC 
CAGCCCTGGCTGCTGGTCGGCGGCGCCGGGCGGCAGAACCGCATGCCCTGGATCTGCCTCGGCATCGCCTGG 
CTGCTGGCCCTGCTGGCCTTGCTCGGGCCCAGTTGGCAGCAACTGGAACAGCCCTCGATGAAGCGTAGCGAC 
CCGCTGGTGGCGATCCTCCAGCTGACTCCCGGGATGCTTGCCGGCGACCTGTCGCCGACCCGCCTGGAGCAG 
GCCCGGCGCAAGCTGCTCGACCTGCTTCGCACGCGCAACGACGCGCAGACCGCGATCGTCGTCTACGCCGGC 
AGCGCGCATACCCTGGTGCCGCTGTCGGACGACCAGCTCACCGCGCGCAACCTGCTCGACGCCCTGAAACCT 
TCGATCATGCCCGAGCCCGGCCAGCGCGCCGACCTCGCCGTGCGCCAGGCCCTCGACCTGCTGGAACAGGGC 
GCCCAGGGCCGCGGCCGCCTGCTGCTGCTGACCAGCGGGCTGAGCGAACCCGAGCGCCAGGGCATCCGCAGC 
GCCCTCGAGCACCGGGCGGCGCGCCTCGCCGTGCTCGGCGTCGGCACGCCGAAGGGCGCTCCGGTGCAGCAG 
GAGGATGGCAGCTTCCTCAAGGACGATCAGGGCGGCATCCTCCTGCCCAGGCTCGACGAAAGCGGGCTGCGC 
CGCTTCGCCGCGGAGATCGGCGCCGGCTACCAGCGCCTGCGGCCGAACGACCGCGACCTCGACAGCCTCGGC 
CTGCTGGCCCGCGGCGGCACGCTGGAGGAAGACCGCGAGAACGCCCTGCTGCGCCTGCAGCGCTGGGCCGAC 
CAGGGTTACTGGCTGCTCCTGCCGCTGCTCCTGCTGGCCGCCTGTGCCGGACGGCGCGGCTGGCTGTTCTGC 
CTGCCGCTGTTGATGCTGAGCCTGCCGCAACCGGCCATGGCCTTCCAGTTCGAAGACCTCTGGCTGCGTCCG 
GACCAGCAAGGCCAGCGCCTGTTGCAACGAGGCCAGGCGGACGAGGCGGCGAAGCGCTTCGAGGACTTCCGC 
TGGAAAGGCCTGTCGCTCTACCAGGCCCGCGACTACGCCGCCGCTGCCCAGGCCTTCGCCCAGGGCGACCAG 
GCCGACGATCACTACAACCGTGGCAACGCCCTGGCCCGCCAGGGCGAACTGGAAGCCGCCGTCGACGCCTAC 
GAACAAGCCCTGGAGCGCCAGCCGCAACTGGTCGCCGCGCAACGCAACAAGGCCCTGGTCGAGGAACTGCTG 
CGCCAGCGCCAGGAACAGGCGGCGCAGCAGCAGGCCGGCGAGAACAAGGAACAGCGCCAGGAAGCGAGCCAG 
CAGAGCCCGCCATCCGGAAGCAGCCAGCGGCCGCCGCGCGATGCGGCGACCGTCGATGCGCAGAAGGCCCAG 
GCCGCGGCGCCCTCGACCAGCCTGCCGGAAGACGAAGGCGAGAAGACCGCCGGAGCACCCGGCCAAGCGCAG 
CCGCAGCCCGACGCCGAGGACGAGCGGACGGGCGACGAGGAAGCCGACGACGGACTCGACGACGAACGTCGC 
CAGGCCCTCGAGCAATGGCTGCGACAGATTCCCGACGATCCCGCCGAGTTGCTGCGGCGCAAGTTCTGGTAC 
CAACAGCAGCAACGCCAGGAAGCCACGCCATGA