ViewGene
Locus Name:
GeneID:
Location:

GeneID:5089
TrivialName: PA14_08020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08020
PAO1 Ortholog Locus:PA0617
Sequence Length:327
Protein Length:108
Start: 689773
Stop: 690099
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04006.1|AE004498_1 (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 107/108 (99%), Positives = 107/108 (99%)
Sequence:
ATGATCGGGATGGATCGCCGTAGCGGGCTGCCCCTGTCCGGCCTGGCTCATCTTAAACAGTCCGTCGAGGAC
ATCCTGACCACCCCGTTGGGCAGCAGGCGCATGCGCCCCGAGTACGGCAGCAAGCTGCGGCGGATGGTCGAC
ATGCCGGTGAGCGAAGGCTGGAAAAGCGCCGTGCAGGCCGAGGTAGCCCGTTCCCTGGGGCGCTGGGAACCG
CGCATCGCATTGTCTGCCGTGCGAGTCGTCGCGGTCGTCGATGGCCGCGTGGATCTGCTCCTGAGCGGCGTG
TTCGAGGGCGAGAACATCAATATGGAGGTCTCGGCGTGA
Translation:
MIGMDRRSGLPLSGLAHLKQSVEDILTTPLGSRRMRPEYGSKLRRMVDMPVSEGWKSAVQAEVARSLGRWEP
RIALSAVRVVAVVDGRVDLLLSGVFEGENINMEVSA*
AnnotationID:5094GeneID:5089
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:55
Gene Name:
Confidence Code:3
GeneProduct:putative baseplate assembly protein W
Cell Localization:()
Synonyms:gpW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3628,pfam04965
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56879.1| (AE016868) baseplate assembly protein W [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 108

 Score =  161 bits (407), Expect = 8e-40
 Identities = 76/108 (70%), Positives = 95/108 (87%)

>gb|AAN68661.1|AE016495_13 (AE016785) pyocin R2_PP, baseplate protein [Pseudomonas putida
           KT2440]
          Length = 108

 Score =  154 bits (389), Expect = 9e-38
 Identities = 75/108 (69%), Positives = 91/108 (84%)






 
Structural Features:
COG3628, Phage baseplate assembly protein W
CD-Length = 116 residues,  94.0% aligned
Score =  127 bits (321), Expect = 2e-31
Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

pfam04965, GPW_gp25, GPW / gp25 family.
CD-Length = 97 residues,  93.8% aligned
Score =  113 bits (283), Expect = 6e-27
Identities = 43/91 (47%), Positives = 60/91 (65%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10178




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27321




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33892




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5089_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5089
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7497
                           PA0617_tr
                           translation of PA0617
                           108
                           99.07
                           99.07
                           0
                           533.0
     

     
     
193005
                           gb|AAG04006.1|AE004498_1
                           (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           108
                           99.07
                           99.07
                           0
                           533.0
     

     
     
193006
                           dbj|BAA83155.1|
                           (AB030825) PRF12~similar to W genes of P2 and phiCTX: baseplate [Pseudomonas aeruginosa]
                           108
                           99.07
                           99.07
                           0
                           533.0
     

     
     
193007
                           gb|AAO56879.1|
                           (AE016868) baseplate assembly protein W [Pseudomonas syringae pv. tomato str. DC3000]
                           108
                           70.37
                           87.96
                           0
                           407.0
     

     
     
193008
                           gb|AAN68661.1|AE016495_13
                           (AE016785) pyocin R2_PP, baseplate protein [Pseudomonas putida KT2440]
                           108
                           69.44
                           84.25
                           0
                           389.0
     

     






      

          
GC ORFID: 48091How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0617Glimmer Score: 

          
Start: 6491116Stop: 6491442

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0617 translation of PA0617Homolog Bit Score 209.0

          
Other Homologs:  t_PA0617 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGGGATGGATCGCCGTAGCGGGCTGCCCCTGTCCGGCCTGGCTCATCTTAAACAGTCCGTCGAGGAC 
ATCCTGACCACCCCGTTGGGCAGCAGGCGCATGCGCCCCGAGTACGGCAGCAAGCTGCGGCGGATGGTCGAC 
ATGCCGGTGAGCGAAGGCTGGAAAAGCGCCGTGCAGGCCGAGGTAGCCCGTTCCCTGGGGCGCTGGGAACCG 
CGCATCGCATTGTCTGCCGTGCGAGTCGTCGCGGTCGTCGATGGCCGCGTGGATCTGCTCCTGAGCGGCGTG 
TTCGAGGGCGAGAACATCAATATGGAGGTCTCGGCGTGA