ViewGene

Locus Name:
GeneID:
Location:

GeneID:5088
TrivialName: PA14_14150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14150
PAO1 Ortholog Locus:PA3854
Sequence Length:315
Protein Length:104
Start: 1210828
Stop: 1211142
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07241.1|AE004802_10 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
GTGAGTGAGGCGACGGCCGCCACGGCGGCGATCGGGAAGTGTTGGTCGGTCTACCTGGTGAGGGCGGAAAAC
GGCGCGTTGTACTGCGGCATCAGCGACGATCCGCTGCGCCGCTTCGACACTCATTGCAGCGGCAAGGGCGCG
CGGTTCTTCCATTCCAGCCCCGCCCGCGCGCTGGTCTACGTCGAGGCCTGCGCCAGCAAGGGCGACGCCCTG
CGCCGCGAGCGGGCGATCAAGGCCCTGAGCAAGCGCGCCAAGGAGCGCCTGTTGGTCGGCGTACCGGTGTTG
CGCGAGGTCGGCGAGCCGGCAATCTAG
Translation:
MSEATAATAAIGKCWSVYLVRAENGALYCGISDDPLRRFDTHCSGKGARFFHSSPARALVYVEACASKGDAL
RRERAIKALSKRAKERLLVGVPVLREVGEPAI*
AnnotationID:5093GeneID:5088
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 23:11:08
Gene Name:
Confidence Code:3
GeneProduct:putative endonuclease domain
Cell Localization:()
Synonyms:PA3854
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2827
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54787.1| (AE016860) endo/excinuclease domain protein [Pseudomonas syringae
          pv. tomato str. DC3000]
          Length = 105

 Score =  114 bits (285), Expect = 1e-25
 Identities = 60/84 (71%), Positives = 63/84 (75%)
Structural Features:
COG2827, Predicted endonuclease containing a URI domain 
[DNA replication, recombination, and repair]
CD-Length = 95 residues,  95.8% aligned
Score =  104 bits (260), Expect = 4e-24
Identities = 33/91 (36%), Positives = 48/91 (52%)
Genomic Context:
Comment:
ReferenceID:15250
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27319
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31712
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5088_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5088

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7496 PA3854_tr translation of PA3854 104 99.99 99.99 0 531.0
193002 gb|AAG07241.1|AE004802_10 (AE004802) hypothetical protein PA3854 [Pseudomonas aeruginosa PAO1] 104 99.03 99.99 0 528.0
193003 gb|AAO54787.1| (AE016860) endo/excinuclease domain protein [Pseudomonas syringae pv. tomato str. DC3000] 109 58.71 64.22 9 279.0
193004 gb|AAN66597.1|AE016287_8 (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440] 115 46.08 54.78 21 256.0
GC ORFID: 48090How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3854Glimmer Score:
Start: 3743110Stop: 3742796
Length: 315
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3854 translation of PA3854Homolog Bit Score 209.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4395 (ORF: BLASTX 118.0), t_PA3854 (ORF: GLIMMER)
GC ORF Sequence
GTGAGTGAGGCGACGGCCGCCACGGCGGCGATCGGGAAGTGTTGGTCGGTCTACCTGGTGAGGGCGGAAAAC
GGCGCGTTGTACTGCGGCATCAGCGACGATCCGCTGCGCCGCTTCGACACTCATTGCAGCGGCAAGGGCGCG
CGGTTCTTCCATTCCAGCCCCGCCCGCGCGCTGGTCTACGTCGAGGCCTGCGCCAGCAAGGGCGACGCCCTG
CGCCGCGAGCGGGCGATCAAGGCCCTGAGCAAGCGCGCCAAGGAGCGCCTGTTGGTCGGCGTACCGGTGTTG
CGCGAGGTCGGCGAGCCGGCAATCTAG