ViewGene

Locus Name:
GeneID:
Location:

GeneID:5087
TrivialName: PA14_20290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20290
PAO1 Ortholog Locus:PA3385
Sequence Length:327
Protein Length:108
Start: 1747928
Stop: 1747602
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06773.1|AE004760_1 (AE004760) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
ATGCGCCCACTGAAACAGGCAACTCCTACCTACTCCAGCCGTACCGCTGACAAATTCGTCGTTCGTCTGCCC
GAGGGCATGCGTGAGCAGATCGCAGAAGTCGCTCGCAGCCATCACCGCAGCATGAACTCCGAGATCATCGCC
CGACTCGAGCAGAGCCTGCTCCAGGAAGGGGCGCTGCAAGACAATCTCGGTGTTCGCCTGGACAGCCCGGAA
CTCAGCCTGCACGAGCGCGAGCTGCTGCAGCGTTTCCGCCAGCTGACCCACCGTCAGCAGAACGCGCTGGTC
GCCCTGATCGCACACGATGCGGAGCTGGCCCAGGCCTGA
Translation:
MRPLKQATPTYSSRTADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQSLLQEGALQDNLGVRLDSPE
LSLHERELLQRFRQLTHRQQNALVALIAHDAELAQA*
AnnotationID:5092GeneID:5087
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 08:08:54
Gene Name:
Confidence Code:3
GeneProduct:DNA binding-protein
Cell Localization:()
Synonyms:algZ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative alginate biosynthesis transcriptional activator
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70045.1|AE016643_6 (AE016790) alginate biosynthesis transcriptional activator
           [Pseudomonas putida KT2440]
          Length = 108

 Score =  176 bits (446), Expect = 2e-44
 Identities = 91/106 (85%), Positives = 99/106 (93%), Gaps = 2/106 (1%)

>gb|AAO55366.1| (AE016862) transcriptional repressor, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 108

 Score =  167 bits (424), Expect = 8e-42
 Identities = 86/106 (81%), Positives = 96/106 (90%), Gaps = 2/106 (1%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:10174
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27317
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5087

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7495 PA3385_tr translation of PA3385 108 99.99 99.99 0 532.0
192998 gb|AAG06773.1|AE004760_1 (AE004760) hypothetical protein PA3385 [Pseudomonas aeruginosa PAO1] 108 99.99 99.99 0 532.0
192999 gb|AAD55364.1| (AF139988) DNA binding-protein; AlgZ [Pseudomonas aeruginosa] 108 99.99 99.99 0 532.0
193000 gb|AAN70045.1|AE016643_6 (AE016790) alginate biosynthesis transcriptional activator [Pseudomonas putida KT2440] 110 82.72 90.00 4 445.0
193001 gb|AAO55366.1| (AE016862) transcriptional repressor, putative [Pseudomonas syringae pv. tomato str. DC3000] 110 78.18 87.27 4 425.0
GC ORFID: 48089How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3385Glimmer Score:
Start: 3206004Stop: 3206330
Length: 327
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3385 translation of PA3385Homolog Bit Score 209.0
Other Homologs: psyr_15may02_Scaffold18_revised_gene2848 (ORF: BLASTX 167.0), t_PA3385 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCCACTGAAACAGGCAACTCCTACCTACTCCAGCCGTACCGCTGACAAATTCGTCGTTCGTCTGCCC
GAGGGCATGCGTGAGCAGATCGCAGAAGTCGCTCGCAGCCATCACCGCAGCATGAACTCCGAGATCATCGCC
CGACTCGAGCAGAGCCTGCTCCAGGAAGGGGCGCTGCAAGACAATCTCGGTGTTCGCCTGGACAGCCCGGAA
CTCAGCCTGCACGAGCGCGAGCTGCTGCAGCGTTTCCGCCAGCTGACCCACCGTCAGCAGAACGCGCTGGTC
GCCCTGATCGCACACGATGCGGAGCTGGCCCAGGCCTGA